View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_3 (Length: 575)
Name: NF14625_high_3
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 86 - 562
Target Start/End: Original strand, 37121803 - 37122277
Alignment:
| Q |
86 |
gactttacaaccataagacttggaagctgtttagtctattttcttcattattactacacttttacatgaataaaacatatttcaaaatatccataacatt |
185 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37121803 |
gactttacaaccataagacttggaag---tttagtctattttcttcattattactacacttttacatgaataaaacatatttcaaaatattcataacatt |
37121899 |
T |
|
| Q |
186 |
acatagatttttgaacttaaaatggttaacattttgannnnnnnnn-cttatcccttagtataagacactttacaaaattttatacagattaacgatttc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
37121900 |
acatagatttttgaacttaaaatggttaacattttgattttttttttcttatcccttaatataagacactttacaaaattttatacaaattaataatttc |
37121999 |
T |
|
| Q |
285 |
tttacataaatatccctatttgttttataattgaaaatgtaaatttcttctctcctatgatattagtaactataacggtaagtatgttacttttaaataa |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37122000 |
tttacataaatatccctatttgttttataattgaaaatgtaaatttcttctctcttatgatattagtaactataacggtaagtatgttacttttaaataa |
37122099 |
T |
|
| Q |
385 |
agatcaattgtggtattgagtctatgttagagaattatcaatccttatttgagatactaaaattaatatatcaacatattatcaagaataattatttttc |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37122100 |
agatcaattgtggtattgagtctatgttagagaattatcaatccttatttgagatactaaaattaatatatcaacatattatcaagaataattatttttc |
37122199 |
T |
|
| Q |
485 |
tttgtttctcttcaaggcaacgttgaatattaaatgttgacatttctctcaactgaaatttaaacattagtttgtcat |
562 |
Q |
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| T |
37122200 |
tttgtttctgttcaagacaacgttgaatattaaatgttgacatttctctcaactgagatttaaacattagtttgtcat |
37122277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 6606716 - 6606780
Alignment:
| Q |
18 |
aataatagataagacaaaattgatctaagatgggaaaatttttccattgccgtatactaaaaccc |
82 |
Q |
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| T |
6606716 |
aataatagataagataaaattgatctaagatggagaaatttttccattgccccatgctaaaaccc |
6606780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 13510755 - 13510714
Alignment:
| Q |
18 |
aataatagataagacaaaattgatctaagatgggaaaatttt |
59 |
Q |
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| T |
13510755 |
aataatatataagacaaaattgatctaaaatgggaaaatttt |
13510714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 36517765 - 36517795
Alignment:
| Q |
29 |
agacaaaattgatctaagatgggaaaatttt |
59 |
Q |
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| T |
36517765 |
agacaaaattgatctaagatgggaaaatttt |
36517795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 10891697 - 10891766
Alignment:
| Q |
18 |
aataatagataagacaaaattgatctaagatgggaaaatttttccattgccgtatactaaaacccaccga |
87 |
Q |
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| T |
10891697 |
aataatagataagacaaaattgatctaagatggggaaatttttccattgccccatgctaaaacccgccga |
10891766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 51879499 - 51879545
Alignment:
| Q |
19 |
ataatagataagacaaaattgatctaagatgggaaaatttttccatt |
65 |
Q |
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| T |
51879499 |
ataatagataagacaaaattaatctaagatggagaaattttttcatt |
51879545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 24579628 - 24579581
Alignment:
| Q |
18 |
aataatagataagacaaaattgatctaagatgggaaaatttttccatt |
65 |
Q |
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| T |
24579628 |
aataatagataagacaaaattgatctaagatggagaaatttttccatt |
24579581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 43585130 - 43585082
Alignment:
| Q |
18 |
aataatagataagacaaaattgatctaagatgggaaaatttttccattg |
66 |
Q |
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| T |
43585130 |
aataatagataagacaaaattgatttaagatggagaaattttttcattg |
43585082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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