View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_31 (Length: 246)
Name: NF14625_high_31
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 40618567 - 40618771
Alignment:
| Q |
5 |
catgggtctcatctaccaagaagaatacccatgttgagcgacgacgaagaccaccaaatatgacaatcaaaagaaaaatccaacttactcgccttcagcc |
104 |
Q |
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| T |
40618567 |
catgggcctcatctaccaagaagaatacccatgtagagcgacgacgaagaccaccaaatatgacaatcaaaagaaaaatccagcttactcgccttcagcc |
40618666 |
T |
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| Q |
105 |
accacaaaaaataaagtttaatactatcaagaa---gttgatcaagagtcaccattgtattgttgaaaacaattaaatacattttttagccaatttattt |
201 |
Q |
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| T |
40618667 |
accacaaaaaatgaagcttaatactatcaagaagttgttgatcaagagtcagcattgtattgttgaaaacaattaaatacattttttagccaattttttt |
40618766 |
T |
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| Q |
202 |
taaag |
206 |
Q |
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| T |
40618767 |
taaag |
40618771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 23984951 - 23985030
Alignment:
| Q |
64 |
atgacaatcaaaagaaaaatccaacttactcgccttcagccaccacaaaaaataaagtttaatactatcaagaagttgat |
143 |
Q |
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| T |
23984951 |
atgaaaatcaaaagcaaaacccgatttatttgtctttagccaccaccaaaaatgaagtttaatactatcgagaagttgat |
23985030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 44072674 - 44072523
Alignment:
| Q |
16 |
tctaccaagaagaataccc-atgttgagcgacgacgaagaccaccaaatatgacaatcaaaagaaaaatccaacttactcgccttcagccaccacaaaaa |
114 |
Q |
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| T |
44072674 |
tctacaaagaggaataccccatgtagagggacaacgaagaccaccaaatataaaaatcaaaagaaaacctcagcttattcgtcttcaaccaccacaaaaa |
44072575 |
T |
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| Q |
115 |
ataaagtttaatactatcaagaagttgatcaagagtcaccattgtattgttg |
166 |
Q |
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| T |
44072574 |
atgaagcttaatactatcaagaagttgatcaagagtcgccattatgttgttg |
44072523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 16125644 - 16125710
Alignment:
| Q |
14 |
catctaccaagaagaataccc-atgttgagcgacgacgaagaccaccaaatatgacaatcaaaagaa |
79 |
Q |
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| T |
16125644 |
catccaccaagaggaataccccatgtacagggacgacgaagaccaccaaatatgaaaatcaaaagaa |
16125710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 7411026 - 7410970
Alignment:
| Q |
96 |
ccttcagccaccacaaaaaataaagtttaatactatcaagaagttgatcaagagtca |
152 |
Q |
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| T |
7411026 |
ccttcaaccaccaccaagaatggagcttaatactatgaagaagttgatcaagagtca |
7410970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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