View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_34 (Length: 241)
Name: NF14625_high_34
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4964009 - 4964232
Alignment:
| Q |
1 |
ccaatactaaagaaccaacaattgttttattaaatgaagagacctgtgttaaaagtttatcaatataaacaaccaccatttcctc-aaggcaagcttcaa |
99 |
Q |
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| T |
4964009 |
ccaatacagaagaaccaacaattgttttattaaatgaagagacctgtgttaaaagtttatcaatataaacaaccaccatttcctctaaggcaagcttcaa |
4964108 |
T |
|
| Q |
100 |
caaatttcccaaaccatctttcttcaatgtatcttgaatatatgggatgttaaagctataattttccaaaatagactaaatatttaataatcaaacttca |
199 |
Q |
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| T |
4964109 |
caaatttcccaaaccatctttcttcaatgtaccttgaatatatgggatgttaaagctataattttccaaaatagattaaatatttaataatcaaacttca |
4964208 |
T |
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| Q |
200 |
acttaatgcaatagaagccacttg |
223 |
Q |
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||||||| |||||||||||||||| |
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| T |
4964209 |
acttaatacaatagaagccacttg |
4964232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 8301989 - 8301890
Alignment:
| Q |
42 |
acctgtgttaaaagtttatcaatataaacaaccaccatttcctcaaggcaagcttcaacaaatttcccaaaccatctttcttcaatgtatcttgaatata |
141 |
Q |
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|||||||||||||| |||| ||| |||||||| |||| || |||||||||||||||||| ||| || |||||||||||||||| |||||||||| |
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| T |
8301989 |
acctgtgttaaaagacggtcaacatatacaaccactgtttcttctaggcaagcttcaacaaatctcctgaaagatctttcttcaatgtaccttgaatata |
8301890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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