View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_5 (Length: 530)
Name: NF14625_high_5
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 511
Target Start/End: Original strand, 51790325 - 51790827
Alignment:
| Q |
8 |
atgaatataatggtaccaatatcggtgtataaatggaatataaatgcnnnnnnnnnnaaagaagaatgtggtataaatgttatacatcaaaactatatta |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51790325 |
atgaatataatggtaccaatatcggtgtataaatggagtataaatgcttttttttt-aaagaagaatgtggtataaatgttatacatcaaaactatatta |
51790423 |
T |
|
| Q |
108 |
atgagatgagatgtctatttatacaccgaaggcatggataaattttggttgcatctccaattcgttgagtcgaagaaacacccgacttgttgttaatacg |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||| |
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| T |
51790424 |
atgagatgagatgtctatttatacaccgaaggaatggataaattttagttgcatctccaattcgttgagtcgaagaaatacacgac---ttgttaatacg |
51790520 |
T |
|
| Q |
208 |
cagcacaaaagaaatgaggaatgacatataaacaaacattttttgacacaaaaatgacatcaggggcaaactcgtaatttccaataaaat-------tat |
300 |
Q |
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|||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51790521 |
cagcacaaaagaaacgaggaatgatatataaacacacattttttgacacaaaaatgacatcaggggcaaactcgtaatttccaataaaatctaggggtat |
51790620 |
T |
|
| Q |
301 |
aattgatttttcagctgcaacccctctctgttatcgtcttcctcttttttcctcccccatctctgaacggtaaacacagttcagaccttaccaccacaat |
400 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| || | |
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| T |
51790621 |
aattgatttttcagctgcaacccctct---ttatcgtcttcctctttttt-ctctcccatctctgaactgtaaacacagttcagaccttaccaccgcatt |
51790716 |
T |
|
| Q |
401 |
ttccgcccgtcgacatcagtcaccaacccgccgtcctaatccaccaccgaatcgcaacccttcttctccagctcgtcaatcaccaccaccagtgatagag |
500 |
Q |
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| T |
51790717 |
tttcagccgtcgacatcagtcaccaacccgccgtcctaatccaccaccgaatcgcaacctttcttctccagctcgtcaatcaccaccaccagtgagagag |
51790816 |
T |
|
| Q |
501 |
accaccgccgt |
511 |
Q |
| |
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||| ||||||| |
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| T |
51790817 |
accgccgccgt |
51790827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 16301901 - 16301820
Alignment:
| Q |
412 |
gacatcagtcaccaacccgccgtcctaatccaccaccgaatcgcaacccttcttctccagctcgtcaatcaccaccaccagt |
493 |
Q |
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| T |
16301901 |
gacatcagtcaccactccggcctcctaatccaccaccgaatcgcagcccctcttctctaactcgtccatcaccaccaccagt |
16301820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 227 - 383
Target Start/End: Complemental strand, 10902645 - 10902482
Alignment:
| Q |
227 |
aatgacatataaacaaacattttttgacacaaaaatgacatcaggggcaaactcgtaatttccaataaaat-------tataattgatttttcagctgca |
319 |
Q |
| |
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||||| ||||||||| |||||| |||||||| | |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |
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| T |
10902645 |
aatgatatataaacacgtatttttagacacaaatacgacatcaggggcaaactcataatttccattaaaatctaggggtataattgatttttcagctgca |
10902546 |
T |
|
| Q |
320 |
acccctctctgttatcgtcttcctcttttttcctcccccatctctgaacggtaaacacagttca |
383 |
Q |
| |
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||| |||||| ||||||||||| ||||| || ||||||||||||| ||| |||||||||||||| |
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| T |
10902545 |
acctctctctcttatcgtcttcatctttctttctcccccatctctaaacagtaaacacagttca |
10902482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 507
Target Start/End: Complemental strand, 10902482 - 10902434
Alignment:
| Q |
457 |
acccttcttctccagctcgtcaatcaccaccaccagtgatagagaccaccg |
507 |
Q |
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| T |
10902482 |
acccttcttctccagctcgtcaatcaccaccaccagtg--agagaccaccg |
10902434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 407 - 504
Target Start/End: Original strand, 11933336 - 11933432
Alignment:
| Q |
407 |
ccgtcgacatcagtcaccaacccgccgtcctaatccaccaccgaatcgcaacccttcttctccagctcgtcaatcaccaccaccagtgatagagacca |
504 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
11933336 |
ccgtcgacatcagtcaccaccccgccgtc-taatccaccaccgaatcgcaacccctcttctccaactcgtcaatcaccaccaccggtgagagagacca |
11933432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 298 - 490
Target Start/End: Original strand, 37356778 - 37356974
Alignment:
| Q |
298 |
tataattgatttttcagctgcaacccctctctgttatcgtct-tcctcttttttcctccccc---atctctgaacggtaaacacagttcagaccttacca |
393 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||||||| || ||||| || ||||||| |||||| ||| |||| ||| |||||||| |||||| |
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| T |
37356778 |
tataattggattttcagctgcaacttctctcttttatcgtcactcttctttctttctccccctcaatctctaaacagtaaccacggttcagactttacca |
37356877 |
T |
|
| Q |
394 |
ccacaatttccgcccgtcgacatcagtcaccaacccgccgtcctaatccaccaccgaatcgcaacccttcttctccagctcgtcaatcaccaccacc |
490 |
Q |
| |
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|||| | || ||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| | |||||||| |||||||||||| |
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| T |
37356878 |
ccaccgtcgtcggccgtcgacatcagtcaccactccgccgtcctaatccaccactgaatcgcaacccctcttcgcaagctcgtccatcaccaccacc |
37356974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 35237609 - 35237514
Alignment:
| Q |
378 |
agttcagaccttaccaccacaatttccgcccgtcgacatcagtcaccaacccgccgtcctaatccaccaccgaatcgcaacccttcttctccagct |
473 |
Q |
| |
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|||||| ||| ||||||||| || |||| | ||||||||||||||||| | | |||| ||| ||| |||||||| | ||||| |||||||||||| |
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| T |
35237609 |
agttcataccctaccaccaccatctccgactgtcgacatcagtcaccaccgcatcgtcgtaacccatcaccgaattgaaacccctcttctccagct |
35237514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 45345318 - 45345260
Alignment:
| Q |
227 |
aatgacatataaacaaacattttttgacacaaaaatgacatcaggggcaaactcgtaat |
285 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||| | ||||||||||||||| ||||||| |
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| T |
45345318 |
aatgatatataaacacgcatttttagacacaaatacgacatcaggggcaaattcgtaat |
45345260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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