View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_6 (Length: 510)
Name: NF14625_high_6
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 52194126 - 52193871
Alignment:
| Q |
20 |
ttctgtagtttcactcattcactccatgactcaacgttcatcttctgcatcctcttccccaatcaacaaattcgatgtctttgatgtcaaggtagaatcg |
119 |
Q |
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| T |
52194126 |
ttctgtagtttcactcattcactccatgactcaacgttcatcttctgcatcctcttccccaatcaacaaattcgatgtctttgatgtcaaggtagaatcg |
52194027 |
T |
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| Q |
120 |
aaaaccgaattcgatgtcttcgatttcaaggtagaatcgaaaaccgagaatcttcctgagataatgctcagaaaattcagaacccctgtcaaatctcctt |
219 |
Q |
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| T |
52194026 |
aaaaccgaattcgatgtcttcgatttcaaggtagaatcgaaaaccgagaatcttcctgagataatgctcagaaaattcagaacccatgtcaaatctcctt |
52193927 |
T |
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| Q |
220 |
ctcctcccattttaaaatacgattttcttcaagcatgtaagtcactcttgttgctc |
275 |
Q |
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| T |
52193926 |
ctcctcccatttcaaaatacgattttcttcaagcatgtaagtcactcttgttgctc |
52193871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 345 - 502
Target Start/End: Complemental strand, 52193802 - 52193645
Alignment:
| Q |
345 |
tacagctgtgtttcgttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatg |
444 |
Q |
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| T |
52193802 |
tacagctgtgtttcgttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatg |
52193703 |
T |
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| Q |
445 |
atttaggttttatttactttatctcaatatatgtgtgattttgaagatgatgatgatg |
502 |
Q |
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| T |
52193702 |
atttaggttttatttactttatctcaatttatgtgtgattttgaagatgatgatgatg |
52193645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 1964753 - 1964842
Alignment:
| Q |
175 |
ctgagataatgctcagaaaattcagaacccctgtcaaatctccttctcctcccattttaaaatacgattttcttcaagcatgtaagtcac |
264 |
Q |
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| T |
1964753 |
ctgagaaaatgttcagaaaattccgaacccctatgaaatctccttctcctcccatttcgaaatacgaatttcttcaagcatgtaagtcac |
1964842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 455
Target Start/End: Original strand, 1964936 - 1965028
Alignment:
| Q |
359 |
gttcaaaacctcaatcgaaggttgtttgcattgatctaggtatcgatcgttcatgcaaaaatctttcgtgaattttcaattgcatgatttaggtttt |
455 |
Q |
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| T |
1964936 |
gttcaaaacctcaatcgaggattgtttccattgatctaggt----atcgttcatgcaaaaacctctcctacattttcaattgcatgatttaggtttt |
1965028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 1964659 - 1964729
Alignment:
| Q |
30 |
tcactcattcactccatgactcaacgttcatcttctgcatcctcttccccaatcaacaaattcgatgtctt |
100 |
Q |
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| T |
1964659 |
tcactcactcgctcgatgactcagcgttcatcttgttcatcctcttccccaatcaacaaattcgacgtctt |
1964729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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