View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_9 (Length: 472)
Name: NF14625_high_9
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_9 |
 | |
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| [»] scaffold0061 (2 HSPs) |
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| [»] scaffold0017 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 179 - 463
Target Start/End: Original strand, 38190619 - 38190903
Alignment:
| Q |
179 |
atgctatctgctgcaattttaaataacgtctacaacatagtgaaatttgaacaaatcaccattctattcactattcaaccacagttggggtggttgattc |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38190619 |
atgctatctgctgcaattttaaataacgtctacaacatagtgaaatttgaacaaatcaccattctattcactattcaaccacagttggggtggttgattc |
38190718 |
T |
|
| Q |
279 |
agcgatgccgcgccgctgtttttggtcacgttcgtttttgacagtggcacgctcatgggttgaaggatcggtatcagattctttgaaacccgtgagggtc |
378 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
38190719 |
agcgatgctgcgctgccgtttttggtcacgttcgtttttgacagtggcacgctcatgggttgatggatcggtatcagattctttgaaacccgtgagggtc |
38190818 |
T |
|
| Q |
379 |
gttttctcttaacacggtgtggttgatgtgttgttcaccggcgtggttgttcatagtggtactggttcatgaaacacaggttctg |
463 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38190819 |
gttttctcttaacacggtgtggttgatgtgttgttcaccggtgtggttgttcatagaggtactggttcatgaaacacaggttctg |
38190903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 38187345 - 38187506
Alignment:
| Q |
18 |
ggaacagggttggtcaatccatccccacctcgtatggtcatttactcattagtgacaattaatctttgttttaaacagtacttcatttcaaatctttgta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187345 |
ggaacagggttggtcaatccatccccacctcgtatggtcatttactcattagtgacaattaatctttgttttaaacagtacttcatttcaaatctttgta |
38187444 |
T |
|
| Q |
118 |
agtcaagtaaaaaaccttaacatgaatatacatttaaacttagccccttatttggttatata |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38187445 |
agtcaagtaaaaaaccttaacatgaatatacatttaaacttagccccttatttggttatata |
38187506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 7412435 - 7412313
Alignment:
| Q |
113 |
ttgtaagtcaagtaaaaaaccttaacatgaatatacatttaaacttagccccttatttggttatatatgctatctgctgca-attttaaataacgtctac |
211 |
Q |
| |
|
||||||||||| ||| ||||| ||||| |||| ||||||| ||||||| || |||||| ||||||||| | | | ||||| |||||||| ||| |||| |
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| T |
7412435 |
ttgtaagtcaattaacaaaccctaacaagaatctacatttcaacttagttccatatttgattatatatgttgtatactgcagtttttaaattacggctac |
7412336 |
T |
|
| Q |
212 |
aacatagtgaaatttgaacaaat |
234 |
Q |
| |
|
||| ||||||||||||||||||| |
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|
| T |
7412335 |
aacgtagtgaaatttgaacaaat |
7412313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 38208289 - 38208359
Alignment:
| Q |
111 |
ctttgtaagtcaagtaaaaaaccttaacatgaatatacatttaaacttagccccttatttggttatatatg |
181 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||||||||| |||| |||| |||| ||||||||||||||| |
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|
| T |
38208289 |
ctttgtaagttaagtaaaaaatcttaacaagaatatacatataaatttagtccctaatttggttatatatg |
38208359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 38181991 - 38182032
Alignment:
| Q |
18 |
ggaacagggttggtcaatccatccccacctcgtatggtcatt |
59 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38181991 |
ggaacagggttggtcaatccatccccacctcgtaaggtcatt |
38182032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 38208373 - 38208443
Alignment:
| Q |
170 |
tggttatatatgctatctgctgcaattttaaataacgtctacaacatagtgaaatttgaacaaatcaccattct |
243 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| || |||||| ||||||||||||||||||||| ||||| |
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| T |
38208373 |
tggttatatattttgtctgctgcaattttaaatagcggctacaa---agtgaaatttgaacaaatcactattct |
38208443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 252 - 460
Target Start/End: Original strand, 11853518 - 11853729
Alignment:
| Q |
252 |
ttcaaccacagttggggtggttgattcagcgatgccgcgccgctgtttttggtcacgttcgttttt---gacagtggcacgctcatgggttgaaggatcg |
348 |
Q |
| |
|
||||||||||||| |||||||||| || |||||| |||||||| |||||| |||| |||| || || ||||||||||||||| ||||||||||||||| |
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| T |
11853518 |
ttcaaccacagtttgggtggttgagtcggcgatgtcgcgccgccgttttttgtcatgttccttgtttccgacagtggcacgctcgtgggttgaaggatcg |
11853617 |
T |
|
| Q |
349 |
gtatcagattctttgaaacccgtgagggtcgttttctcttaacacggtgtggttgatgtgttgttcaccggcgtggttgttcatagtggtactggttcat |
448 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||| ||| ||||||||||||| |
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| T |
11853618 |
gtatcagattctttgaaacttgtgagggtcgttttctcttaacacggtgtggctgatggattgttcatcgacgtggttgttcgtagaggtactggttcat |
11853717 |
T |
|
| Q |
449 |
gaaacacaggtt |
460 |
Q |
| |
|
|||||||||||| |
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| T |
11853718 |
gaaacacaggtt |
11853729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 8809681 - 8809616
Alignment:
| Q |
113 |
ttgtaagtcaagtaaaaaaccttaacatgaatatacatttaaacttagccccttatttggttatat |
178 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||||||| ||||| | |||||||||||||| |
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|
| T |
8809681 |
ttgtaagtcaagtgaaaaaacttaacaagaatatacatttaaagttagctcgttatttggttatat |
8809616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 8845569 - 8845506
Alignment:
| Q |
113 |
ttgtaagtcaagtaaaaaaccttaacatgaatatacatttaaacttagccccttatttggttat |
176 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||| |||| | |||||||||||| |
|
|
| T |
8845569 |
ttgtaagtcaagtaaaaaaacttaacaagaatatacatttaaatttagttctttatttggttat |
8845506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 8822303 - 8822425
Alignment:
| Q |
113 |
ttgtaagtcaagtaaaaaaccttaacatgaatatacatttaaacttagccccttatttggttatatatgctatctgctgcaattt-taaataacgtctac |
211 |
Q |
| |
|
|||| |||||||| ||||||||||||| || || ||||| ||| |||| | ||||||||||||||||| | ||| || |||||| ||| ||||| |||| |
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|
| T |
8822303 |
ttgttagtcaagtgaaaaaccttaacaagactacacattgaaatttagttcattatttggttatatatgttgtctactacaatttgtaattaacggctac |
8822402 |
T |
|
| Q |
212 |
aacatagtgaaatttgaacaaatc |
235 |
Q |
| |
|
||||| |||| |||| |||||||| |
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|
| T |
8822403 |
aacatcgtgagattt-aacaaatc |
8822425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 65431 - 65489
Alignment:
| Q |
185 |
tctgctgcaattttaaataacgtctacaacatagtgaaatttgaacaaatcaccattct |
243 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
65431 |
tctgctgcaattttaaatagcggctacaacatagtgaaatttgaacaaatcaccattct |
65489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 65362 - 65402
Alignment:
| Q |
141 |
gaatatacatttaaacttagccccttatttggttatatatg |
181 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||| |
|
|
| T |
65362 |
gaatatacatataaatttagtcccttatttggttatatatg |
65402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 133201 - 133143
Alignment:
| Q |
185 |
tctgctgcaattttaaataacgtctacaacatagtgaaatttgaacaaatcaccattct |
243 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
133201 |
tctgctgcaattttaaatagcggctacaacatagtgaaatttgaacaaatcaccattct |
133143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 133270 - 133230
Alignment:
| Q |
141 |
gaatatacatttaaacttagccccttatttggttatatatg |
181 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||| |
|
|
| T |
133270 |
gaatatacatataaatttagtcccttatttggttatatatg |
133230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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