View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_low_1 (Length: 602)
Name: NF14625_low_1
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_low_1 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 321 - 602
Target Start/End: Complemental strand, 40662655 - 40662374
Alignment:
| Q |
321 |
attagacactttaagatttttgttacattgctgtctcggtaaatcaaaaatttgcgatgttgtcattctcaaataagtctgtgatggnnnnnnnttgtac |
420 |
Q |
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| T |
40662655 |
attagacactttaaggtttttgttacattgctgtctcggtaaatcaaaaacctgtgatgttgtcattctcaaataagtctgtgatggaaaaaaattgtac |
40662556 |
T |
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| Q |
421 |
acacactaaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggttcagtcccttttgcatgatcatg |
520 |
Q |
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| T |
40662555 |
acacactaaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatttgtggttcagtcccttttgcatgatcatg |
40662456 |
T |
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| Q |
521 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctctcct |
602 |
Q |
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| T |
40662455 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattctactttgaatataatgggaataaccgtttctctcct |
40662374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 427 - 510
Target Start/End: Complemental strand, 40676114 - 40676029
Alignment:
| Q |
427 |
taaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggtt--cagtcccttttg |
510 |
Q |
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| T |
40676114 |
taaggatcaaagatatgaatacacagaagatgctctagaaagtaaatagtgaaagaatcctgatttatggttcacagtcccttttg |
40676029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 602
Target Start/End: Complemental strand, 40675996 - 40675916
Alignment:
| Q |
521 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctctcct |
602 |
Q |
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| T |
40675996 |
aaacaagttttgtgaattgtcgatcatcctgcaaatcagag-attctactttgaatataatgggaaaaaccacttctctcct |
40675916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26495955 - 26495992
Alignment:
| Q |
1 |
ggaccttgctggtcaatatggtaggaaggatccgccaa |
38 |
Q |
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| T |
26495955 |
ggaccttgctgggcaatatggtaggaaggatccgccaa |
26495992 |
T |
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