View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_low_11 (Length: 457)
Name: NF14625_low_11
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 40178890 - 40179341
Alignment:
| Q |
1 |
aggaaagagtaccatatagatgattccctacattgccattagggagatattcatacacaagtaattgttgatagctatcatcataataaccaataagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40178890 |
aggaaagagtaccatatagatgattccctacattgccattagggagatattcatacacaagtaattgttgatagctatcatcataataaccaataagctt |
40178989 |
T |
|
| Q |
101 |
cacaagatgaatgtggtggatttgagctatctgcttgacctgtcctcacatcacatatacatgtgaattacagttaaccgttgatgctgctcaataacta |
200 |
Q |
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| T |
40178990 |
cacaagatgaatgtggtggatttgagctatctgcttgacctgtcctcacat-----atacatgtgaattactgttaaccgttgatgctgctcaataacta |
40179084 |
T |
|
| Q |
201 |
aactcaagaaattataaatcataactaacat----------------tttatcatcgtgcattgtacggggtctcactactagtacatttacacataata |
284 |
Q |
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| T |
40179085 |
aactcaagaaattataaatcataactaacatatgttctttcaacgattttatcatcgtgcattgtacggggtctcactactagtacatttacacataata |
40179184 |
T |
|
| Q |
285 |
attatctatctgtgcattgcaagggttttaaatgctaggttcgttatgaatttacctcaggaatgaaatctcgagttagagcaaataggcgcctttttat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179185 |
attatctatctgtgcattgcaagggttttaaatgctaggttcgttatgaatttacctcaggaatgaaatctcgagttagagcaaataggcgcctttttat |
40179284 |
T |
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| Q |
385 |
agcgacaaaagatccatcttgaagcaaacctttgtatacaaaaccaaatctcccttc |
441 |
Q |
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| T |
40179285 |
agcgacaaaagatccatcttgaagcaaacctttgtatacaaaaccaaatctcccttc |
40179341 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 31167856 - 31167804
Alignment:
| Q |
179 |
cgttgatgctgctcaataactaaactcaagaaattataaatcataactaacat |
231 |
Q |
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||||| |||| |||||||| ||||| ||| |||||||||||| |||||||||| |
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| T |
31167856 |
cgttgttgcttctcaataattaaacgcaacaaattataaatcgtaactaacat |
31167804 |
T |
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