View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_low_14 (Length: 389)
Name: NF14625_low_14
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 19219193 - 19218823
Alignment:
| Q |
1 |
gatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
19219193 |
gatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataaagaattaattt |
19219094 |
T |
|
| Q |
101 |
gccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggtaataacttatacaaaaacattcttatgattggaggaataaat |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19219093 |
gccttgatttaactactggagcaattaagaaaaatggtgttaaaacaggttctaaggtaataacttatacaaaaacattcttatgattgaaggaataaat |
19218994 |
T |
|
| Q |
201 |
aaatatttgttttgtggcctaggttttggctctcaagatttatgaccatagtgttttggttctgtttatgcaatatgggttgtcaattgcctatgttaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19218993 |
aaatatttgttttgtggcctaggttttggctctcaagatttatgaccatagtgttttggttctgtttatgcaatatgggttgtcaattgcctatgttaaa |
19218894 |
T |
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| Q |
301 |
attattatcaagtatgagagaaatcttaatttctatggcatatgctagtattgatttagtttttattgttt |
371 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19218893 |
attattatcaagtataagagaaatcttaatttctatggcatatgctagtattgatttagtttttattgttt |
19218823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 19225450 - 19225198
Alignment:
| Q |
1 |
gatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19225450 |
gatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattatttt |
19225351 |
T |
|
| Q |
101 |
gccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggtaataacttatacaaaaacattcttatgattggaggaataaat |
200 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19225350 |
gccttgatttaactactggagcaattgagaaaactggtgttaaaacaggttctcaggtaataacttatacaaaaacattcttatgattgaaggaataaat |
19225251 |
T |
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| Q |
201 |
aaatatttgttttgtggcctaggttttggctctcaagatttatgaccatagtg |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19225250 |
aaatatttgttttgtggcctaggttttggctctcaagatttatgaccatagtg |
19225198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 19221889 - 19221938
Alignment:
| Q |
321 |
aaatcttaatttctatggcatatgctagtattgatttagtttttattgtt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
19221889 |
aaatcttaatttctatggcatatgctagtaatgttttagtttttattgtt |
19221938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 19225160 - 19225111
Alignment:
| Q |
321 |
aaatcttaatttctatggcatatgctagtattgatttagtttttattgtt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
19225160 |
aaatcttaatttctatggcatatgctagtattgttttagttttcattgtt |
19225111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 14681943 - 14681843
Alignment:
| Q |
46 |
ggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaa |
145 |
Q |
| |
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|||||| ||||||||| ||||||| |||| ||||| ||||| |||| | ||||| ||||||||||||||| ||| |||| |||| ||||||||||||| |
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| T |
14681943 |
ggagcagggaagaaggttgatatagttttgagaaaatatgatggtgaacttgcttgtcttgatttaactacttgagtaattgagaacattggtgttaaaa |
14681844 |
T |
|
| Q |
146 |
c |
146 |
Q |
| |
|
| |
|
|
| T |
14681843 |
c |
14681843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 27735531 - 27735434
Alignment:
| Q |
42 |
tatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtg |
139 |
Q |
| |
|
||||||| || ||||||||||||||||| |||| ||||| |||||| |||| | ||||| |||||||||||||| |||| ||| |||| ||||||| |
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| T |
27735531 |
tatcggaacagggaagaagggtgatatatttttgagaaaagatgatggtgaacttgcttgtcttgatttaactaccggagtaatggagaacattggtg |
27735434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 27589318 - 27589215
Alignment:
| Q |
41 |
ttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgt |
140 |
Q |
| |
|
|||| |||||| || |||||||||||||| |||| | ||| |||||| ||||| |||| | |||||||| ||||| |||| |||| |||| |||||||| |
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|
| T |
27589318 |
ttattggagcaggggagaagggtgatatattttttaaaaaagatgatgatgaactagcctatcttgatttgactaccggagtaattcagaacattggtgt |
27589219 |
T |
|
| Q |
141 |
taaa |
144 |
Q |
| |
|
|||| |
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|
| T |
27589218 |
taaa |
27589215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 27724289 - 27724210
Alignment:
| Q |
42 |
tatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggag |
121 |
Q |
| |
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|||||||||| ||||||||||||||||| |||| ||||| |||||| |||| | ||||| |||||||||| ||||||| |
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| T |
27724289 |
tatcggagcagggaagaagggtgatatatttttgagaaaagatgatggtgaacttgcttgtcttgatttaagcactggag |
27724210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 27716930 - 27716889
Alignment:
| Q |
80 |
atgatgataatgaattagcttgccttgatttaactactggag |
121 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
27716930 |
atgatgataatgaactagcttgtcttgatttaactaccggag |
27716889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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