View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_low_16 (Length: 382)
Name: NF14625_low_16
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 42095097 - 42094744
Alignment:
| Q |
18 |
ctcttatagttagtg--actaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgctttgacaagtttctttcc |
115 |
Q |
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| T |
42095097 |
ctcttatagttagtgtgactaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtgatgctttgacaagtttctttcc |
42094998 |
T |
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| Q |
116 |
ccttcatgtttttcacttttaactctttccttttt--------------gaaacattgtgtttgcatcaggcttgccttgatttgaagctgtatatattt |
201 |
Q |
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| T |
42094997 |
ccttcatgtttttcacttttaactctttcctttttctgtcctgttttttgaaacattgtgtttgcatcaggcttgccttgatttgaagctgtatatattt |
42094898 |
T |
|
| Q |
202 |
tgttgttttccacttctttgtctatagtacatcctctgtcgctgatatttgttgtagtatcttatcttgcttgacaacatgtaattacctcttaattatt |
301 |
Q |
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| T |
42094897 |
tgttgttttccacttctttgtctatagtacatcctctgtcgctgatatttgttgtagtatcttatcttgcttgataacatgtaattacctcttaattatt |
42094798 |
T |
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| Q |
302 |
taacatatgatattggtttttgaaatgaacatatgaatctgctattatttttca |
355 |
Q |
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| T |
42094797 |
taacatatgatattggtttttgaaatgaacatatgaatctgctattatttttca |
42094744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 6957875 - 6958009
Alignment:
| Q |
200 |
tttgttgttttccacttctttgtctatagtacatcctctgtcgctgatatttgttgtagtatcttatcttgcttgacaacatgtaattacctcttaatta |
299 |
Q |
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| T |
6957875 |
tttgttgtttttcacttctttgtctatagtacatcatgtgttgatgatatttgttgttg-----tatcttgcttgacattgtgt-attacatgttaatta |
6957968 |
T |
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| Q |
300 |
tttaacatatgatattggtttttgaaatgaacatatgaatct |
341 |
Q |
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| T |
6957969 |
tttaacatttgat-tctgtttttgaaaggaacatatgaatct |
6958009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 4352122 - 4352183
Alignment:
| Q |
206 |
gttttccacttctttgtctatagtacatcctc---tgtcgctgatatttgttgtagtatctt |
264 |
Q |
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| T |
4352122 |
gtttttcacttctttgtctatagtacctcctcctatgttgctaatatttgttgtagtatctt |
4352183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 48909302 - 48909189
Alignment:
| Q |
34 |
ctaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgctttgacaagtttctttccccttcatgtttttcactt |
133 |
Q |
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||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||| | | ||||||| |||||||||||||||| | |||||||| |
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| T |
48909302 |
ctaggcttgagttcaaatgttgaagatgatg---gagagtgaggctttgatgagaagatgaccctttgacgggtttctttccccttcagctatttcactt |
48909206 |
T |
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| Q |
134 |
ttaactctttccttttt |
150 |
Q |
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| T |
48909205 |
ttttctatttccttttt |
48909189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 1660962 - 1660907
Alignment:
| Q |
300 |
tttaacatatgatattggtttttgaaatgaacatatgaatctgctattatttttca |
355 |
Q |
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| T |
1660962 |
tttaacatatggttttggtgtttgaaaggaacatatgaatctgttataatttttca |
1660907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 35164099 - 35164154
Alignment:
| Q |
300 |
tttaacatatgatattggtttttgaaatgaacatatgaatctgctattatttttca |
355 |
Q |
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| T |
35164099 |
tttaacatatggttttggtgtttgaaaggaacatatgaatctgttataatttttca |
35164154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 35361100 - 35361044
Alignment:
| Q |
39 |
tttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgct |
98 |
Q |
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| T |
35361100 |
tttgagttcataggttgaagatgatga---agagtgagactttgatgagaaggtgatgct |
35361044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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