View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_low_17 (Length: 355)
Name: NF14625_low_17
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 31 - 337
Target Start/End: Original strand, 52054132 - 52054438
Alignment:
| Q |
31 |
attgaaatagacaaaatgaaatatataaaaaagatgttattgatatgattaatgttttaaagttttgggtggtgatgcggcgtgttggtcacatgtctta |
130 |
Q |
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| T |
52054132 |
attgaaatagacaaaattaaatatataaaaaagatgtgattgatatgattaatgttttaaagttttgggtgatgatgcggcatgttggtcacatgtctta |
52054231 |
T |
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| Q |
131 |
actacttagtcattgttgttaaacaattcatcgtataattagagtatttgaccttcggtagtcacctcaaagtattcacacgacatagactctttgaaat |
230 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52054232 |
actactaagtcattgttgttaaacaattcgtcgtataattagagtatttgaccttcggtagtcacctcaaagtattcacacgacatagactctttgaaat |
52054331 |
T |
|
| Q |
231 |
cattatgagactaatttttgagttggcactggaacatccttaatcatgttatcaactctctaaactttgtattgaattgttttatacattttattggctc |
330 |
Q |
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| T |
52054332 |
cactatgagactaatttttgagttggtagtggaacatcctcaatcatgttatcaactctccaaactttgtattgaattgttttatacattttattggctc |
52054431 |
T |
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| Q |
331 |
ctatttt |
337 |
Q |
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||||||| |
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| T |
52054432 |
ctatttt |
52054438 |
T |
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