View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_low_20 (Length: 337)
Name: NF14625_low_20
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 67 - 322
Target Start/End: Original strand, 43306636 - 43306901
Alignment:
| Q |
67 |
gatgttggtgtttgcactggctcgaatatgataaaatagtggaatcattatnnnnnnnnn-tgttaacaaaaacaaagtaaatattctaagaatggatag |
165 |
Q |
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| T |
43306636 |
gatgttggtgtttgcactggctcgaatatgataaaatagtggaatcattataaaaaaaaaatgttaacaaaaacaaagtaaatattctaagaatggatag |
43306735 |
T |
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| Q |
166 |
atttattgacacgggtttgcttcaaaaggtttattaaatttatagattcaatggtgaagactaaattatagcaatttaacaggatatgatatgaggtaga |
265 |
Q |
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| T |
43306736 |
attaattgacacgggtttgcttcaaaaggtttattaaatttatagattcaatggtgaagactaacttatagcaatttaacaggatatgatatgaggtaga |
43306835 |
T |
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| Q |
266 |
aat---------tatgcaacaaggcattacttacaatcaatgctattttccatttctgttcattat |
322 |
Q |
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| T |
43306836 |
aatcattcattctatgtaacaaggcattacttacaatcaatgctattttccatttctgttcattat |
43306901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 43306340 - 43306394
Alignment:
| Q |
9 |
atgaaatttatcgatttctattaggatgatcatgttatatctctattacctattt |
63 |
Q |
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| T |
43306340 |
atgaaatttatcgttttctattaggatgatcatgttatatctctattacctattt |
43306394 |
T |
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