View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14625_low_27 (Length: 295)

Name: NF14625_low_27
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14625_low_27
NF14625_low_27
[»] chr2 (2 HSPs)
chr2 (61-103)||(16937573-16937615)
chr2 (61-103)||(17008240-17008282)
[»] chr7 (3 HSPs)
chr7 (141-207)||(12936021-12936089)
chr7 (141-208)||(33105934-33106005)
chr7 (141-208)||(49018481-49018550)
[»] chr4 (1 HSPs)
chr4 (141-208)||(27897479-27897548)
[»] chr8 (3 HSPs)
chr8 (145-207)||(32448429-32448493)
chr8 (171-208)||(27015394-27015431)
chr8 (171-208)||(27267092-27267131)


Alignment Details
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 16937573 - 16937615
Alignment:
Q  61 tcagaaacgagattccagttatcctttttgttacaatatataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16937573 tcagaaacgagattccagttatcctttttgttacaatatataa 16937615  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 17008240 - 17008282
Alignment:
Q  61 tcagaaacgagattccagttatcctttttgttacaatatataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17008240 tcagaaacgagattccagttatcctttttgttacaatatataa 17008282  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 12936021 - 12936089
Alignment:
Q  141 tatataggacaatctttgtcccnnnnnnngaccattttgcccttatgg--gggcattttcgtaaattag 207  Q
    ||||||||||||||||||||||       |||||||||||||||||||  |||||||||||||||||||    
T  12936021 tatataggacaatctttgtccctttttttgaccattttgcccttatggaagggcattttcgtaaattag 12936089  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33106005 - 33105934
Alignment:
Q  141 tatataggacaatctttgtcccnnnnnnngaccattttgcccttatgg----gggcattttcgtaaattagt 208  Q
    ||||||||||||||||||||||       |||||||||||||||||||    ||||||||||||||||||||    
T  33106005 tatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggggcattttcgtaaattagt 33105934  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 49018481 - 49018550
Alignment:
Q  141 tatataggacaatctttgtcccnnnnnnngaccattttgcccttat--gggggcattttcgtaaattagt 208  Q
    ||||||||||||||||||||||       |||||||||||||||||  | ||||||||||||||||||||    
T  49018481 tatataggacaatctttgtccctttttttgaccattttgcccttataggagggcattttcgtaaattagt 49018550  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 27897548 - 27897479
Alignment:
Q  141 tatataggacaatctttgtcccnnnnnnngaccattttgcccttatgg--gggcattttcgtaaattagt 208  Q
    ||||||||||||||||||||||       ||||||||||||||||| |  ||||||||||||||||||||    
T  27897548 tatataggacaatctttgtcccttttttggaccattttgcccttatagaagggcattttcgtaaattagt 27897479  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 32448493 - 32448429
Alignment:
Q  145 taggacaatctttgtcccnnnnnnngaccattttgcccttatgg--gggcattttcgtaaattag 207  Q
    ||||||||||||||||||       |||||||||||||||||||  |||||||||||||||||||    
T  32448493 taggacaatctttgtccctttttttgaccattttgcccttatggaagggcattttcgtaaattag 32448429  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 27015431 - 27015394
Alignment:
Q  171 accattttgcccttatgggggcattttcgtaaattagt 208  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  27015431 accattttgcccttatgggggtattttggtaaattagt 27015394  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 27267092 - 27267131
Alignment:
Q  171 accattttgcccttatgg--gggcattttcgtaaattagt 208  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  27267092 accattttgcccttatggaagggcattttcgtaaattagt 27267131  T

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