View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_low_28 (Length: 292)
Name: NF14625_low_28
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 41806450 - 41806652
Alignment:
| Q |
29 |
caaagtaacccccatcgaatgcgacctctgattctagcatttaggatctaacttacatcgttgagcatgtaatctaagtactagatgcacactatattaa |
128 |
Q |
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| T |
41806450 |
caaagcaactcccatcgaatgcgacctgtgattcttgcatttaggatctaactcccatcgttgagcatgaaataaaagtactagatgtagtctatattaa |
41806549 |
T |
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| Q |
129 |
tttctgatcctaaacaactagtgaatattgatgtcacataagtatcctacatatgacaataatcctctttatattcaatacatgcataaaaatgattcac |
228 |
Q |
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| T |
41806550 |
tttctgatcctaaacaactagtgaatattgatgtcacataagtatcctacatatgacaataatcctctttatattcaatacatgcataaaaatgattcac |
41806649 |
T |
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| Q |
229 |
agg |
231 |
Q |
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| T |
41806650 |
agg |
41806652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 42034064 - 42033969
Alignment:
| Q |
65 |
gcatttaggatctaacttacatcgttgagcatgtaatctaagtactagatgcacactatattaatttctgatcctaaacaactagtgaatattgat |
160 |
Q |
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| T |
42034064 |
gcatttatgatccaactcccatcattgagcatgaaataaaagtactagatgtagtctgtaataatttatgatcctaaacaactagtgaatattgat |
42033969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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