View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_low_4 (Length: 533)
Name: NF14625_low_4
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 22365941 - 22366225
Alignment:
| Q |
19 |
gtttataggagaagcttggttctttctactttttacttgaataaggaaaaaggttgaagcattgagtgtcccttccgtgcggtgaagtgaataacaatca |
118 |
Q |
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| T |
22365941 |
gtttacaggagaagcttggttctttcttctttttacttgaacaaagaaaaaggttgaagcattgagtgtcccttccgtgcggtgaagtgaataacaatca |
22366040 |
T |
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| Q |
119 |
atttgaaacccaaaaatacacggcattttcaacggtcatttttcacttagaacaaggattgtgttttttg-tttggtcaaaggaaagaacacaaacatgg |
217 |
Q |
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| T |
22366041 |
atttgaaacccaaaaatacacgccattttcaacggtcattttttactt-caacaa-gattgtattttttgttttggtcaaaggaaagaacacaaacatgg |
22366138 |
T |
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| Q |
218 |
ccgaaacatcctcattcaacaa---taataatattccaattgaaattgttagcgaagaagaaatggcgttcatagaagctgcttatg |
301 |
Q |
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| T |
22366139 |
ccgaaacatcctcatccaacaacgttaataatattccaattgaaattgttagcgaagaagaaatggcgttcatagaagcagcttatg |
22366225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 377 - 517
Target Start/End: Original strand, 22366301 - 22366447
Alignment:
| Q |
377 |
acaacaatgcaatttccattaactcaattactcttgtatctaaaccaagactatct------tcatcttcatcatcatgtgctggtgacattgaagatac |
470 |
Q |
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| T |
22366301 |
acaacaatgcaatttccattaactcaattactcttgtatctaaacgaagactatcttcatcttcatcttcatcatcatgtgctggtgacattgaagatac |
22366400 |
T |
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| Q |
471 |
tgttgttaattcttcttcacagaagaaacccaatatttctgattcat |
517 |
Q |
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| T |
22366401 |
tgttgttaattcttcttcacagaagaaacccaatatttctgattcat |
22366447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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