View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14625_low_6 (Length: 530)

Name: NF14625_low_6
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14625_low_6
NF14625_low_6
[»] chr4 (3 HSPs)
chr4 (1-507)||(7982313-7982819)
chr4 (451-503)||(46029761-46029813)
chr4 (451-507)||(46258557-46258613)
[»] chr7 (3 HSPs)
chr7 (202-366)||(46292944-46293108)
chr7 (451-507)||(3868199-3868255)
chr7 (451-503)||(36718982-36719034)
[»] chr5 (2 HSPs)
chr5 (450-504)||(23074819-23074873)
chr5 (451-507)||(27179135-27179191)
[»] chr1 (9 HSPs)
chr1 (451-510)||(14949041-14949100)
chr1 (451-510)||(49251296-49251355)
chr1 (451-502)||(50616292-50616343)
chr1 (451-502)||(50624120-50624171)
chr1 (451-508)||(14939026-14939083)
chr1 (451-508)||(14944270-14944327)
chr1 (451-498)||(18527077-18527124)
chr1 (458-502)||(1547703-1547747)
chr1 (466-507)||(42105676-42105717)
[»] chr2 (1 HSPs)
chr2 (451-502)||(35413604-35413655)
[»] chr8 (2 HSPs)
chr8 (451-504)||(8790563-8790616)
chr8 (451-502)||(16939097-16939148)
[»] chr6 (1 HSPs)
chr6 (467-507)||(4226790-4226830)


Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 7982313 - 7982819
Alignment:
Q  1 tttaagagctataataagggtgtctacgatagctctttatacctgtaatcgatatttatgatatcgctttgtacctataaccgctattacacattggttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7982313 tttaagagctataataagggtgtctacgatagctctttatacctataatcgatatttatgatatcgctttgtacctataaccgctattacacattggttt 7982412  T
Q  101 atcannnnnnnnnngtatataaacgctattatagaatatccatatttaatatccgtcacatttaagtaaataatccaatagagaatggaggaagcaaaca 200  Q
    ||||          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7982413 atcattttttttttgtatataaacgctattatagaatatccatatttaatatctgtcacatttaagtaaataatccaatagagaatggaggaagcaaaca 7982512  T
Q  201 tttgcaatataaatgcaatcattgttaacttaaggttgcttgtatgtgctcaggcgggggagcaaatatgaatttaataaattcatattagttggaattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7982513 tttgcaatataaatgcaatcattgttaacttaaggttgcttgtatgtgctcaggcgggggagcaaatatgaatttaataaattcatattagttggaattt 7982612  T
Q  301 actaatataaatttaaatccatatttgctccgctgcctgtggatatacaagtcaccagttaagaatatgcgtttatatcttcttttactaattaattatc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7982613 actaatataaatttaaatccatatttgctccgctgcctgtggatatacaaatcaccagttaagaatatgcgtttatatcttcttttactaattaattatc 7982712  T
Q  401 tattgtgaggacacaagtcagaatatgtgattaattagaatagataaaatatgtgtctaattgggtgattttaattggttgataatgtaaagttgtttta 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7982713 tattgtgaggacacaagtcataatatgtgattaattagaatagataaaatatgtgtctaattgggtgattttaattgattgataatgtaaagttgtttta 7982812  T
Q  501 cattgtc 507  Q
    |||||||    
T  7982813 cattgtc 7982819  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 503
Target Start/End: Complemental strand, 46029813 - 46029761
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacat 503  Q
    |||||||||||  | | ||| ||||||||||||| ||||||||||||||||||    
T  46029813 atgtgtctaatgagataattataattggttgatagtgtaaagttgttttacat 46029761  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 507
Target Start/End: Original strand, 46258557 - 46258613
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacattgtc 507  Q
    |||||||||||  | | ||| ||||||||||||| ||||||||| ||||||||||||    
T  46258557 atgtgtctaatgagataattataattggttgatagtgtaaagttattttacattgtc 46258613  T

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Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 46292944 - 46293108
Alignment:
Q  202 ttgcaatataaatgcaatcattgttaacttaaggttgcttgtatgtgctcaggcgggggagcaaatatgaatttaataaattcatattagttggaattta 301  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||  |  ||| | ||    
T  46292944 ttgcaatataaatgcaatcattgttaacttaaggttgcttgtgtgtgctcaggcgggggagcaaatatgaatataattaattcatatatgcaggattgta 46293043  T
Q  302 ctaatataaatttaaatccatatttgctccgctgcctgtggatatacaagtcaccagttaagaat 366  Q
    ||| ||| ||| ||||| ||||||||||   ||||||||||||| |||| |||||||||||||||    
T  46293044 ctactatgaatctaaattcatatttgctttactgcctgtggatacacaaatcaccagttaagaat 46293108  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 507
Target Start/End: Complemental strand, 3868255 - 3868199
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacattgtc 507  Q
    |||||| ||||| ||||||||||||||||||||| || ||| |||||||||| ||||    
T  3868255 atgtgtttaatttggtgattttaattggttgatagtgcaaaattgttttacactgtc 3868199  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 503
Target Start/End: Original strand, 36718982 - 36719034
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacat 503  Q
    |||||||||||||| ||| ||||||||||||||  |||||| |||||||||||    
T  36718982 atgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacat 36719034  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 504
Target Start/End: Complemental strand, 23074873 - 23074819
Alignment:
Q  450 tatgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacatt 504  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23074873 tatgtgtctaattgggtgattttaattggttgataatgtaaaattgttttacatt 23074819  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 507
Target Start/End: Original strand, 27179135 - 27179191
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacattgtc 507  Q
    |||| ||||||||  ||||||||||| ||||||| |||||| || ||||||||||||    
T  27179135 atgtatctaattgaatgattttaattagttgatagtgtaaaattattttacattgtc 27179191  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 510
Target Start/End: Complemental strand, 14949100 - 14949041
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacattgtcggt 510  Q
    |||||||||||||  ||||||||||| |||||||||||||| ||||||||| ||||||||    
T  14949100 atgtgtctaattgtatgattttaattagttgataatgtaaaattgttttactttgtcggt 14949041  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 510
Target Start/End: Original strand, 49251296 - 49251355
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacattgtcggt 510  Q
    ||||||||||||||  ||| |||||||||||||| ||||||||||||||| |||||||||    
T  49251296 atgtgtctaattggacgatgttaattggttgatagtgtaaagttgttttatattgtcggt 49251355  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 50616292 - 50616343
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttaca 502  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  50616292 atgtgtctaatttgatgattttaattggttgatagtgtaaagttgttttaca 50616343  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 50624120 - 50624171
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttaca 502  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  50624120 atgtgtctaatttgatgattttaattggttgatagtgtaaagttgttttaca 50624171  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 508
Target Start/End: Complemental strand, 14939083 - 14939026
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacattgtcg 508  Q
    |||||||||||||  ||||||||||| ||||||| |||||| ||||||||||||||||    
T  14939083 atgtgtctaattgtatgattttaattagttgatagtgtaaaattgttttacattgtcg 14939026  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 508
Target Start/End: Complemental strand, 14944327 - 14944270
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacattgtcg 508  Q
    |||||||||||||  ||||||||||| ||||||| |||||| ||||||||||||||||    
T  14944327 atgtgtctaattgtatgattttaattagttgatagtgtaaaattgttttacattgtcg 14944270  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 18527124 - 18527077
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttt 498  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||    
T  18527124 atgtgtctaattgaatgattttaattggttgatagtgtaaagttgttt 18527077  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 1547747 - 1547703
Alignment:
Q  458 taattgggtgattttaattggttgataatgtaaagttgttttaca 502  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||    
T  1547747 taattgagtgattttaattgattgatagtgtaaagttgttttaca 1547703  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 507
Target Start/End: Complemental strand, 42105717 - 42105676
Alignment:
Q  466 tgattttaattggttgataatgtaaagttgttttacattgtc 507  Q
    ||||||||||||||||| | |||||| |||||||||||||||    
T  42105717 tgattttaattggttgacagtgtaaacttgttttacattgtc 42105676  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 35413655 - 35413604
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttaca 502  Q
    |||||| ||||||| ||| ||||||||||||||| |||||||||||||||||    
T  35413655 atgtgtttaattggatgaatttaattggttgatagtgtaaagttgttttaca 35413604  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 8790616 - 8790563
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttacatt 504  Q
    |||||||||||||||||||| |||| | |||||| ||||||||| |||||||||    
T  8790616 atgtgtctaattgggtgattctaatcgattgatagtgtaaagttattttacatt 8790563  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 16939097 - 16939148
Alignment:
Q  451 atgtgtctaattgggtgattttaattggttgataatgtaaagttgttttaca 502  Q
    ||||||||||||  |||||||||||||||||| | |||||| ||||||||||    
T  16939097 atgtgtctaatttagtgattttaattggttgacagtgtaaaattgttttaca 16939148  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 4226830 - 4226790
Alignment:
Q  467 gattttaattggttgataatgtaaagttgttttacattgtc 507  Q
    |||||||||||| ||||| |||||||||| |||||||||||    
T  4226830 gattttaattggatgatagtgtaaagttggtttacattgtc 4226790  T

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