View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14626_high_15 (Length: 232)
Name: NF14626_high_15
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14626_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 43075659 - 43075856
Alignment:
| Q |
20 |
caccactataccatgtggaatgaatataaataaatccttcaatcattgaccttaatttctaagtgcgtatgttaattagtttcctttagg-aaatcatct |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43075659 |
caccactctaccatgtggaatgaatataaataaatccttcaatcattgaccttaatttctaagtgcgtatgttaattagtttcctttagggaaatcatct |
43075758 |
T |
|
| Q |
119 |
tttaacaacaaaaagaaaatatttataaatttagatactaacccttctgcggaagaaccaattcagtccatttcaatgacacactaaaatgtataatt |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43075759 |
tttaacaacaaaaagaaaatatttacaaatttagatactaacccttctgcggaagaaccaattcagtccatttcaatgacacactaaaatgtataatt |
43075856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 43085886 - 43086083
Alignment:
| Q |
20 |
caccactataccatgtggaatgaatataaataaatccttcaatcattgaccttaatttctaagtgcgtatgttaattagtttcctttagg-aaatcatct |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43085886 |
caccactctaccatgtggaatgaatataaataaatccttcaatcattgaccttaatttctaagtgcgtatgttaattagtttcctttagggaaatcatct |
43085985 |
T |
|
| Q |
119 |
tttaacaacaaaaagaaaatatttataaatttagatactaacccttctgcggaagaaccaattcagtccatttcaatgacacactaaaatgtataatt |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43085986 |
tttaacaacaaaaagaaaatatttacaaatttagatactaacccttctgcggaagaaccaattcagtccatttcaatgacacactaaaatgtataatt |
43086083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 43089557 - 43089754
Alignment:
| Q |
20 |
caccactataccatgtggaatgaatataaataaatccttcaatcattgaccttaatttctaagtgcgtatgttaattagtttcctttagg-aaatcatct |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43089557 |
caccactctaccatgtggaatgaatataaataaatccttcaatcattgaccttaatttctaagtgcgtatgttaattagtttcctttagggaaatcatct |
43089656 |
T |
|
| Q |
119 |
tttaacaacaaaaagaaaatatttataaatttagatactaacccttctgcggaagaaccaattcagtccatttcaatgacacactaaaatgtataatt |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43089657 |
tttaacaacaaaaagaaaatatttacaaatttagatactaacccttctgcggaagaaccaattcagtccatttcaatgacacactaaaatgtataatt |
43089754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University