View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14626_high_16 (Length: 229)
Name: NF14626_high_16
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14626_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 20691229 - 20691026
Alignment:
| Q |
1 |
gtgacacattctttcatccatttcctccaaagagtcgaaaatgacattttacccataatgtcatccaagtaattgcagtccacagaatcgtaggcctttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
20691229 |
gtgacacattctttcatccatttcctccaaagagtcagaaatgacattttacccataacgtcatccaagtaattctagtccacagaatcgtaggcctttt |
20691130 |
T |
|
| Q |
101 |
caaaatcaactttaaacaatatattatagatttgtttctattctcctacaaaagtgccactacgatatcttttattattacgattttatctctttatatc |
200 |
Q |
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|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20691129 |
caaaatcaactttaaacaatatagtatagattagtttctattctcctacaaaagtgccactacgatatcttttattattacgattttatctctttatatc |
20691030 |
T |
|
| Q |
201 |
ttag |
204 |
Q |
| |
|
|||| |
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|
| T |
20691029 |
ttag |
20691026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 10288863 - 10288759
Alignment:
| Q |
15 |
catccatttcctccaaagagtcgaaaatgacattttacccataatgtcatccaagtaattgcagtccacagaatcgtaggccttttcaaaatcaacttta |
114 |
Q |
| |
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||||||||||||||| | ||||| ||| |||||||| |||||| || ||||| || || || ||||||||||| || |||||||| |||||||| || |
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| T |
10288863 |
catccatttcctccacaaagtcggaaaagacattttctccataacatcgtccaaatattttcaatccacagaatcatatgccttttcgaaatcaaccttg |
10288764 |
T |
|
| Q |
115 |
aacaa |
119 |
Q |
| |
|
||||| |
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| T |
10288763 |
aacaa |
10288759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 49057101 - 49057219
Alignment:
| Q |
1 |
gtgacacattctttcatccatttcctccaaagagtc-gaaaatgacattttacccataatgtcatccaagtaattgcagtccacagaatcgtaggccttt |
99 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| |||||| ||||| |
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| T |
49057101 |
gtgacacatgctttcatccatttcctccaaagagtcagaaaatgacattttccccataacaccatccaagtaattccagtccaca-tatcgtatgccttc |
49057199 |
T |
|
| Q |
100 |
tcaaaatcaactttaaacaa |
119 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
49057200 |
tcaaaatcaactttaaacaa |
49057219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 15106483 - 15106366
Alignment:
| Q |
4 |
acacattctttcatccatttcctccaaagagtcgaaaatgacattttacccataatgtcatccaagtaattgcagtccacagaatcgtaggccttttcaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||| ||| || |||| | ||||||||||| || || || ||||||||||| |||||||||| |
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| T |
15106483 |
acacattctttcatccatttcctccaatgattcggaaatggcatattgcccacaccatcatccaagtattttcaatctacagaatcgtatgccttttcaa |
15106384 |
T |
|
| Q |
104 |
aatcaactttaaacaata |
121 |
Q |
| |
|
| ||||| ||||| |||| |
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|
| T |
15106383 |
agtcaaccttaaataata |
15106366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 24574468 - 24574568
Alignment:
| Q |
15 |
catccatttcctccaaagagtcgaaaatgacattttacccataatgtcatccaagtaattgcagtccacagaatcgtaggccttttcaaaatcaacttta |
114 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||| || |||| |||||||| || || |||| ||||| || || ||||| || || ||||||||| |
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| T |
24574468 |
catccacttcctccaaagagtcggaaaagacattttcccgataacatcatccaaatacttccagttgacagagtcataagccttctcgaagtcaacttta |
24574567 |
T |
|
| Q |
115 |
a |
115 |
Q |
| |
|
| |
|
|
| T |
24574568 |
a |
24574568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 25133515 - 25133630
Alignment:
| Q |
1 |
gtgacacattctttcatccatttcctccaaagagtcgaaaatgacattttacccataatgtcatccaagtaattgcagtccacagaatcgtaggcctttt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| ||| |||||||| | ||| | |||||||| ||||| || | | ||||||||| || |||| |
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|
| T |
25133515 |
gtgacacactctttcatccatttcctccaaagggtcggaaaagacattttgctcatgacatcatccaaataatttcaataaatagaatcgtaagcttttt |
25133614 |
T |
|
| Q |
101 |
caaaatcaactttaaa |
116 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
25133615 |
caaaatccactttaaa |
25133630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 16175475 - 16175433
Alignment:
| Q |
77 |
agtccacagaatcgtaggccttttcaaaatcaactttaaacaa |
119 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||||||| |
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|
| T |
16175475 |
agtccactgaatcataagccttttcaaaatcaactttaaacaa |
16175433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 20356072 - 20356019
Alignment:
| Q |
63 |
atccaagtaattgcagtccacagaatcgtaggccttttcaaaatcaactttaaa |
116 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
20356072 |
atccaagtaatgcaaatccaccgaatcgtaagccttttcaaaatcaactttaaa |
20356019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 14948987 - 14948884
Alignment:
| Q |
17 |
tccatttcctccaaagagtcgaaaatgacattttacccataatgtcatccaagtaattgcagtccacagaatcgtaggccttttcaaaatcaactttaaa |
116 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||| |||||||| |||| |||||| || || || | |||||| || | ||||||||||||||| ||||| |
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|
| T |
14948987 |
tccatttcctccaaagattcgtaaacgacattt-acccataacatcattcaagtatttccaatctatagaatcatatgtcttttcaaaatcaaccttaaa |
14948889 |
T |
|
| Q |
117 |
caata |
121 |
Q |
| |
|
|||| |
|
|
| T |
14948888 |
taata |
14948884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 17952095 - 17952149
Alignment:
| Q |
4 |
acacattctttcatccatttcctccaaagagtcgaaaatgacattttacccataa |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| ||||||||| |||| |
|
|
| T |
17952095 |
acacattctttcatccatttcctccaaagattcggaaacaccattttacctataa |
17952149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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