View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14626_high_3 (Length: 418)

Name: NF14626_high_3
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14626_high_3
NF14626_high_3
[»] chr8 (2 HSPs)
chr8 (8-383)||(44218041-44218434)
chr8 (191-312)||(13029516-13029631)
[»] chr3 (3 HSPs)
chr3 (191-312)||(9716697-9716818)
chr3 (197-278)||(10179109-10179190)
chr3 (197-278)||(54948952-54949033)
[»] chr7 (2 HSPs)
chr7 (197-278)||(47936151-47936232)
chr7 (206-261)||(1117156-1117211)
[»] chr1 (1 HSPs)
chr1 (220-295)||(23727615-23727689)
[»] chr6 (1 HSPs)
chr6 (197-278)||(16853666-16853747)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 44218041 - 44218434
Alignment:
Q  8 gagcagagagtacaacccattcccctattccaatattagcatat-----accggttccttccttcatccaataagttgatcaagaacgtgaatactttaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44218041 gagcagagagtacaacccattcccctattccaatattagcatatcatgcaccggttccttccttcatccaataagttgatcaagaacgtgaatactttaa 44218140  T
Q  103 tttcgcataaaaacaccatgctgcatatgtattggtttttaattagttttaacagttttagtaatatttagcaccatgtannnnnnnn------------ 190  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                         
T  44218141 tttcgcataaaaacaccatgctgcatatgtattggtttttaatttgttttaacagttttagtaatatttagcaccatgtttttttttatttttttttatt 44218240  T
Q  191 -ataacatacaaattagaaaaatttagagcatgatttttcacatttactctcaccctttataaccatcacttactccacattcattttcaacttatttct 289  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44218241 tataacatacaaattagaaaaatttagagcatgatttttcacattcactctcaccctttataaccatcacttactccacattcattttcaacttatttct 44218340  T
Q  290 atccattttgacaattattctaatatattttcaccatgatgctattgtattcatttgtcctgaattttaatttggttgtttatttgtactaata 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44218341 atccattttgacaattattctaatatattttcaccatgatgctattgtattcatttgtcctgaattttaatttggttgtttatttgtactaata 44218434  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 312
Target Start/End: Complemental strand, 13029631 - 13029516
Alignment:
Q  191 ataacatacaaattagaaaaatttagagcatgatttttcacatttactctcaccctttataaccatcacttactccacattcattttcaacttatttcta 290  Q
    ||||| ||||||||  |||||||||  ||||||||||||||||| |||||||||||||||||||| ||||      |||||| ||||||||| |||| |     
T  13029631 ataacctacaaattgaaaaaatttattgcatgatttttcacattaactctcaccctttataaccaccact------acattcgttttcaactcatttatg 13029538  T
Q  291 tccattttgacaattattctaa 312  Q
     | |||||||||||||| ||||    
T  13029537 ccaattttgacaattatactaa 13029516  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 9716697 - 9716818
Alignment:
Q  191 ataacatacaaattagaaaaatttagagcatgatttttcacatttactctcaccctttataaccatcacttactccacattcattttcaacttatttcta 290  Q
    ||||| ||||||||  |||| |||||  || ||||||||||||| ||  | |||||||||||||||||| ||||||||||||||||| |||| |||| ||    
T  9716697 ataacctacaaattcaaaaagtttagttcaagatttttcacattcacatttaccctttataaccatcacctactccacattcattttgaactcatttata 9716796  T
Q  291 tccattttgacaattattctaa 312  Q
     |||||||||||||||| ||||    
T  9716797 cccattttgacaattatactaa 9716818  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 10179190 - 10179109
Alignment:
Q  197 tacaaattagaaaaatttagagcatgatttttcacatttactctcaccctttataaccatcacttactccacattcattttc 278  Q
    ||||||||| | |||||||| |||| ||||||||||||  || ||||||||||||| || ||||||| ||||||||||||||    
T  10179190 tacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccacttaccccacattcattttc 10179109  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 54949033 - 54948952
Alignment:
Q  197 tacaaattagaaaaatttagagcatgatttttcacatttactctcaccctttataaccatcacttactccacattcattttc 278  Q
    ||||||||| | |||||||| |||| ||||||||||||  || ||||||||||||| || ||||||| ||||||||||||||    
T  54949033 tacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccacttaccccacattcattttc 54948952  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 47936232 - 47936151
Alignment:
Q  197 tacaaattagaaaaatttagagcatgatttttcacatttactctcaccctttataaccatcacttactccacattcattttc 278  Q
    ||||||||| | |||||||| |||| ||||||||||||  || ||||||||||||| || ||||||| ||||||||||||||    
T  47936232 tacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccacttaccccacattcattttc 47936151  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 1117156 - 1117211
Alignment:
Q  206 gaaaaatttagagcatgatttttcacatttactctcaccctttataaccatcactt 261  Q
    ||||||||||| |||  |||||||||||| |||||| ||||||||||| |||||||    
T  1117156 gaaaaatttagtgcaaaatttttcacattcactctccccctttataactatcactt 1117211  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 23727689 - 23727615
Alignment:
Q  220 atgatttttcacatttactctcaccctttataaccatcacttactccacattcattttcaacttatttctatccat 295  Q
    ||||||||||| ||| ||||||||||| |||||||| ||||  |||||||||||||||||||| ||||||| ||||    
T  23727689 atgatttttcatattcactctcaccctatataaccaccactc-ctccacattcattttcaactcatttctacccat 23727615  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 16853666 - 16853747
Alignment:
Q  197 tacaaattagaaaaatttagagcatgatttttcacatttactctcaccctttataaccatcacttactccacattcattttc 278  Q
    ||||||||| | |||||| | |||| ||||||||||||  || ||||||||||||| || ||||||| ||||||||||||||    
T  16853666 tacaaattaaacaaatttggtgcataatttttcacattccctttcaccctttataaacaccacttaccccacattcattttc 16853747  T

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