View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14626_high_4 (Length: 321)

Name: NF14626_high_4
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14626_high_4
NF14626_high_4
[»] chr4 (1 HSPs)
chr4 (17-310)||(30767391-30767687)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 30767391 - 30767687
Alignment:
Q  17 aaaaaggaacaaggagtgggagaata---attttgctgagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaata 113  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30767391 aaaaaggaacaaggagtgggagaataataattttgctgagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaata 30767490  T
Q  114 ttatcagtggaataatacctgatagaaaactttgctcagttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccacctt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30767491 ttatcagtggaataatacctgatagaaaactttgctcagttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccacctt 30767590  T
Q  214 gaactgtatcaggaatgcagaaacctgctaatccatcagaaacaaacctgcttccaaagattgaagcttgatgaacttgttgagacctgtgatgatg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30767591 gaactgtatcaggaatgcagaaacctgctaatccatcagaaacaaacctgcttccaaagattgaagcttgatgaacttgttgagacctgtgatgatg 30767687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University