View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14626_high_9 (Length: 269)

Name: NF14626_high_9
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14626_high_9
NF14626_high_9
[»] chr4 (7 HSPs)
chr4 (12-256)||(35785893-35786136)
chr4 (12-256)||(23702998-23703243)
chr4 (12-256)||(55018397-55018640)
chr4 (12-106)||(38157809-38157903)
chr4 (160-256)||(38157660-38157756)
chr4 (12-81)||(7107710-7107779)
chr4 (12-92)||(39337189-39337269)
[»] chr8 (2 HSPs)
chr8 (12-255)||(21143116-21143354)
chr8 (113-175)||(20660278-20660340)
[»] scaffold0060 (1 HSPs)
scaffold0060 (14-256)||(12423-12665)
[»] chr2 (1 HSPs)
chr2 (35-256)||(42929567-42929788)
[»] chr5 (2 HSPs)
chr5 (23-241)||(9671588-9671806)
chr5 (12-256)||(13374548-13374792)
[»] chr1 (2 HSPs)
chr1 (12-146)||(52794491-52794624)
chr1 (12-146)||(9627076-9627209)
[»] chr3 (1 HSPs)
chr3 (131-256)||(33780796-33780921)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 35785893 - 35786136
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35785893 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacataatcattttattgggt 35785992  T
Q  112 gaaatcgtgtataatcactcctattaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgtt 211  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||| || ||||||||||||||||||||||||    
T  35785993 gaaatcgtgtataaccactcctattaattgtgaaatcgtagaat-catgatctttgaatcaatttctcaattatggtcacagtggaaaagatgcggcgtt 35786091  T
Q  212 ttcaatcgtgggtcagagaaaggaaagagattgaggttgttgttg 256  Q
    |||||||| |||||||||||| ||| ||||| |||||||||||||    
T  35786092 ttcaatcgcgggtcagagaaatgaaggagatagaggttgttgttg 35786136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 23703243 - 23702998
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggt 111  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||    
T  23703243 agagacaaacaagcaacagcagtaacctgagtgatccatggcttattcttttgaaatatcaaactagtaacaaatctatcacataatcattttattgagt 23703144  T
Q  112 gaaa-tcgtgtataatcactcctattaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgt 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  23703143 gaaaatcgtgtataatcactcctattaattgtgaaatcgtagaatccacgatctttgaatcgatttctcaattctggtcacagtggaaaagatgaggcgt 23703044  T
Q  211 tttcaatcgtgggtcagagaaaggaaagagattgaggttgttgttg 256  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||    
T  23703043 tttcaatcgcgggtcagagaaagaaaggagattgaggttgttgttg 23702998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 55018640 - 55018397
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggt 111  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  55018640 agagacaaacaagcaacaacagtaagctgagtgatccatggcttatccttttgaaatatcaaactaataacgaatctatcacataatcatttt-ttgggt 55018542  T
Q  112 gaaatcgtgtataatcactcctattaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgtt 211  Q
    | |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  55018541 gcaatcgtgtataatcactcctattaatcgtgaaatcgtagaatccatgatctttgaatcgatttctcaattctggtcacagtggaaaagatgcggcgtt 55018442  T
Q  212 ttcaatcgtgggtcagagaaaggaaagagattgaggttgttgttg 256  Q
    |||||||  |||| ||||||||||| ||||||||| |||||||||    
T  55018441 ttcaatcacgggtaagagaaaggaaggagattgagcttgttgttg 55018397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 38157903 - 38157809
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttat 106  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38157903 agagacaaacaagcaacaacagtaagatgagtgatccatgacttatccttttgaaatatcaaactagtaacgaatctatcacataatcattttat 38157809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 38157756 - 38157660
Alignment:
Q  160 gatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgttttcaatcgtgggtcagagaaaggaaagagattgaggttgttgttg 256  Q
    |||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  38157756 gatctttgaatcaatttctcaattatggtcacagtggaaaagatgcggcgttttcaatcgcgggtcagagaaaggaatgagattgaggttgttgttg 38157660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 7107779 - 7107710
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaa 81  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  7107779 agagacaaacaagcaacaacagtaatctgaatgatccatgacttatccttttgaaatatcaaactagtaa 7107710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 39337269 - 39337189
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatca 92  Q
    |||||||||||||||||| |||| | |||||| ||||| |||||||||||||||||  |||||||||||||||||||||||    
T  39337269 agagacaaacaagcaacagcagtgagctgagtcatccaaggcttatccttttgaaacttcaaactagtaacgaatctatca 39337189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 21143354 - 21143116
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  21143354 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacaaatctatcgcataatcattttattgggt 21143255  T
Q  112 gaaatcgtgtataatcactcctattaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgtt 211  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  21143254 gaaatcgtgtataatcactccttttaattgtgaaatcgtagaatccacgatctttgaatcgatttctcaattctggtcacagtggaaaagatgcggcgtt 21143155  T
Q  212 ttcaatcgtgggtcagagaaaggaaagagattgaggttgttgtt 255  Q
    ||||||||     |||||||||||| |||||||| |||||||||    
T  21143154 ttcaatcg-----cagagaaaggaaggagattgaagttgttgtt 21143116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 20660340 - 20660278
Alignment:
Q  113 aaatcgtgtataatcactcctattaattgtgaaatcgtagaatccacgatcttcgaatcgatt 175  Q
    ||||||||||||||| ||||||| ||| |||||||| |||||||||||||||| |||||||||    
T  20660340 aaatcgtgtataatcgctcctatcaatcgtgaaatcatagaatccacgatctttgaatcgatt 20660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 12665 - 12423
Alignment:
Q  14 agacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggtga 113  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12665 agacaaacaagcaacaatagtaatttgagtgatccatgacttatccttttgaaatatcaaactagtaacgaatctatcacataatcattttattgggtga 12566  T
Q  114 aatcgtgtataatcactcctattaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgtttt 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  12565 aatcgtgtataatcactcctattaattgtgaaatcgttgaatccacgatctttgaattgatttctcaattctggtcacagtggaaaagatgtggcgtttt 12466  T
Q  214 caatcgtgggtcagagaaaggaaagagattgaggttgttgttg 256  Q
    |||||| |||||||||||| ||| |||||||| ||||||||||    
T  12465 caatcgcgggtcagagaaatgaaggagattgaagttgttgttg 12423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 42929788 - 42929567
Alignment:
Q  35 aatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggtgaaatcgtgtataatcactccta 134  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42929788 aatctgagtgatccatggcttatccttttgaaatatataactagtaacgaatctatcacataatcattttattgggtgaaatcgtgtataatcactccta 42929689  T
Q  135 ttaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgttttcaatcgtgggtcagagaaagg 234  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  42929688 ttaattgtgaaatcgtagaatccacgatctttgaatcgatttctcaattctggtcacagtggaaaagatgcgacgttttcaatcgcgggtcagagaaagg 42929589  T
Q  235 aaagagattgaggttgttgttg 256  Q
    || |||||||||||||||||||    
T  42929588 aaggagattgaggttgttgttg 42929567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 9671588 - 9671806
Alignment:
Q  23 agcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggtgaaatcgtgta 122  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  9671588 agcaacaacaataatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatatatcacataatcattttattgggtgaaatcgtgta 9671687  T
Q  123 taatcactcctattaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgttttcaatcgtgg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||  ||||||||||| ||    
T  9671688 taatcactcctattaattgtgaaatcgtagaatccacgatctttgaatcgatttctcaattctggtcacagtggaaaagatgcgaagttttcaatcgcgg 9671787  T
Q  223 gtcagagaaaggaaagaga 241  Q
    |||||||||||||| ||||    
T  9671788 gtcagagaaaggaaggaga 9671806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 13374548 - 13374792
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggt 111  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13374548 agagacaaacaagcaacaacagtaatctgagtgatccatgactcatccttttgaaatatcaaactagtaacgaatctatcacataatcattttattgggt 13374647  T
Q  112 gaaatcgtgtataatcactcctattaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgtt 211  Q
    |||||    | |||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||||||    
T  13374648 gaaattagttctaatcattcctattaattgtgaaattgtagaatccacgatctttgaatcaatttctcaattctggtcacaatgaaaaagatgcggcgtt 13374747  T
Q  212 ttcaatcgtgggtcagagaaaggaaagagattgaggttgttgttg 256  Q
    ||||| || |||||||||||||||| |||||||||||||||||||    
T  13374748 ttcaaacgcgggtcagagaaaggaaggagattgaggttgttgttg 13374792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 52794491 - 52794624
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggt 111  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  52794491 agagacaaacaagaaaca-caggaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacataatcattttgttgggt 52794589  T
Q  112 gaaatcgtgtataatcactcctattaattgtgaaa 146  Q
    |||||||||||||||||||| ||||||||||||||    
T  52794590 gaaatcgtgtataatcactcttattaattgtgaaa 52794624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 9627209 - 9627076
Alignment:
Q  12 agagacaaacaagcaacaacagtaatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatctatcacatattcattttattgggt 111  Q
    ||||||||| ||| |||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  9627209 agagacaaataagaaaca-cggtaatatgagtgattcatggcttatccttttgaaatatcaaactagtaacgaatctatcacataatcattttattgagt 9627111  T
Q  112 gaaatcgtgtataatcactcctattaattgtgaaa 146  Q
    |||||||||||||||||||||||||||||||||||    
T  9627110 gaaatcgtgtataatcactcctattaattgtgaaa 9627076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 33780796 - 33780921
Alignment:
Q  131 cctattaattgtgaaatcgtagaatccacgatcttcgaatcgatttctcaattctgatcacagtggaaaagatgcggcgttttcaatcgtgggtcagaga 230  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  33780796 cctattaattgtgaaatcgtagaatccacgatctttgaatcgatttctcaattctggtcatagtggaaaagatgcggcgttttcaatcgcgggtcagaga 33780895  T
Q  231 aaggaaagagattgaggttgttgttg 256  Q
    |||||| |||||||||||||||||||    
T  33780896 aaggaaggagattgaggttgttgttg 33780921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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