View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14626_low_1 (Length: 834)

Name: NF14626_low_1
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14626_low_1
NF14626_low_1
[»] chr6 (18 HSPs)
chr6 (38-502)||(28152218-28152682)
chr6 (498-818)||(28151740-28152060)
chr6 (38-672)||(28095117-28095751)
chr6 (347-673)||(26340469-26340794)
chr6 (673-814)||(28095803-28095944)
chr6 (358-504)||(28525221-28525367)
chr6 (358-442)||(28246413-28246497)
chr6 (358-504)||(28239373-28239519)
chr6 (40-238)||(26340175-26340373)
chr6 (566-668)||(2170831-2170933)
chr6 (355-442)||(28142683-28142770)
chr6 (356-442)||(2170618-2170704)
chr6 (564-645)||(28526593-28526674)
chr6 (563-603)||(28191295-28191335)
chr6 (370-421)||(26876614-26876665)
chr6 (708-802)||(26340859-26340953)
chr6 (358-439)||(28328652-28328733)
chr6 (358-439)||(28506288-28506369)
[»] chr5 (1 HSPs)
chr5 (563-675)||(16693983-16694095)
[»] scaffold0038 (2 HSPs)
scaffold0038 (358-442)||(46575-46659)
scaffold0038 (358-504)||(39535-39681)
[»] scaffold0019 (1 HSPs)
scaffold0019 (357-442)||(55270-55355)
[»] scaffold0286 (2 HSPs)
scaffold0286 (566-668)||(12328-12430)
scaffold0286 (356-442)||(12557-12643)
[»] chr2 (2 HSPs)
chr2 (552-633)||(3282519-3282598)
chr2 (681-814)||(3282343-3282476)


Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 38 - 502
Target Start/End: Complemental strand, 28152682 - 28152218
Alignment:
Q  38 ataaggattggtgaactgaatatcctacatgctgctttcttgtttgaatatgtgcattcgacattccttaagggcaaatggcatgatcgaaaaatcatac 137  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||    
T  28152682 ataaggattggtgaactgaatatcctccatgctgctttcttgtttgaatatatgcattcgactttccttaaggtcaaatggcatgatcgaaaaatcatac 28152583  T
Q  138 ctaaccagcgcatggttccattcactttttaaaagtacttcatccattcttaccatgtcttgtagtggcaaacaaaatagatatgtatgatcgggttcta 237  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28152582 ctaaccaccgcatggttccattcactttttaaaagtacttcatccattcttaccatgtcttgtagtggcaaacaaaatagatatgtatgatcgggttcta 28152483  T
Q  238 tagtgaaataaggaggatgagatggacagtcaagagcgcattcaatgccattgaggaatattttgaaaatggagaaaatagatgtaaagtttgtgttata 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  28152482 tagtgaaataaggaggatgagatggacagtcaagagcgcattcaatgccattgaggaatattttaaaaatggagaaaatagatgaaaagtttgtgttata 28152383  T
Q  338 tttatggccagtagtacagaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctgga 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28152382 tttatggccagtagtacagaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctctggtgcttaaacgactctgga 28152283  T
Q  438 atcctcgaagttccggacaaacgaaacatgatgtctccaacttcatgcagttcctattagtcata 502  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28152282 atcctcaaagttccggtcaaacaaaacatgatgtctccaacttcatgcagttcctattagtcata 28152218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 498 - 818
Target Start/End: Complemental strand, 28152060 - 28151740
Alignment:
Q  498 tcataaagaacttgtaagtttacaaatataaagtatgctatgaaagattaagttaaatacaagaaaaaacaaaacctgattcagtagcatgtttctacat 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28152060 tcataaagaacttgtaagtttacaaatataaagtatgctatgaaagattaagttaaatacaagaaaaaacaaaacctgattcagtagcatgtttctacat 28151961  T
Q  598 gaggaacttgaagatttacaattcaatgcagacaagcattttaaatttggcggaaaccatctaatttcttgaagacattccgaaagaattgtgaaactac 697  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  28151960 gaggaacttgatgatttacaattcaatgcagacaagcattttaaatttggcggaaaccatctaatttcttgaagacattccggaagaattgtgaaattac 28151861  T
Q  698 tcttcaataagtctaagtgtgtcatattggcaaaccacttgagaattattcgaaaagattcatctgttcggttgcattttctaggcacaagagattgtac 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28151860 tcttcaataagtctaagtgtgtcatattggcaaaccacttgagaattattggaaaagattcatctgttcggttgcattttctatgcacaagagattgtac 28151761  T
Q  798 atttgtggacaccatgggact 818  Q
    |||||||||||||||||||||    
T  28151760 atttgtggacaccatgggact 28151740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 38 - 672
Target Start/End: Original strand, 28095117 - 28095751
Alignment:
Q  38 ataaggattggtgaactgaatatcctacatgctgctttcttgtttgaatatgtgcattcgacattccttaagggcaaatggcatgatcgaaaaatcatac 137  Q
    |||| ||||||||||||||||||||| ||| || ||||||||||| |||||||||||||||| |||||||||| |||||||||   | |||| |||| |     
T  28095117 ataatgattggtgaactgaatatcctccattctactttcttgtttaaatatgtgcattcgactttccttaaggtcaaatggcacagttgaaatatcacat 28095216  T
Q  138 ctaaccagcgcatggttccattcactttttaaaagtacttcatccattcttaccatgtcttgtagtggcaaacaaaatagatatgtatgatcgggttcta 237  Q
     |||||| ||||||||||||||| |||||||||| | ||||| ||| |||  ||| |||| |||||  ||||| || |||||||||||||| || ||| |    
T  28095217 gtaaccaccgcatggttccattccctttttaaaaatgcttcacccaatctgtccaggtctagtagtttcaaaccaactagatatgtatgattggcttcaa 28095316  T
Q  238 tagtgaaataaggaggatgagatggacagtcaagagcgcattcaatgccattgaggaatattttgaaaatggagaaaatagatgtaaagtttgtgttata 337  Q
    |  | | |||||||  || || |||||  ||| ||  |||||||  |||||||| |  ||||||||||| ||||||||||||||||| ||| | ||  ||    
T  28095317 ttttaatataaggaaaattagttggaccttcacgaaagcattcatagccattgatggttattttgaaaaaggagaaaatagatgtaacgttcgggtggta 28095416  T
Q  338 tttatggccagtagtacagaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctgga 437  Q
    ||||   ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||| |||| ||  ||||    
T  28095417 tttacatccaatagtacagaagagagaaatggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttgga 28095516  T
Q  438 atcctcgaagttccggacaaacgaaacatgatgtctccaacttcatgcagttcctattagtcataaagaacttgtaagtttacaaatataaagtatgcta 537  Q
    |||||  ||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||| | ||    
T  28095517 atccttaaagttcctggcaatcgaaacatggtgtctccaacttcatgcagttcctattagtcataaataacttgtgagtttagaaagataaagtaagtta 28095616  T
Q  538 tgaaagattaagttaaatacaagaaaaaacaaaacctgattcagtagcatgtttctacatgaggaacttgaagatttacaattcaatgcagacaagcatt 637  Q
     |||| || || | ||||| |||||||  ||||||||||| |||||||||| ||||||||||||||||  |||| |  ||||| |  ||||||||| |||    
T  28095617 agaaatatgaactcaaataaaagaaaatgcaaaacctgatccagtagcatgcttctacatgaggaactcaaagactcgcaatttatcgcagacaagaatt 28095716  T
Q  638 ttaaatttggcggaaaccatctaatttcttgaaga 672  Q
    |||||||||| ||||    ||||||||||||||||    
T  28095717 ttaaatttggtggaattgctctaatttcttgaaga 28095751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 347 - 673
Target Start/End: Original strand, 26340469 - 26340794
Alignment:
Q  347 agtagtacagaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcctcgaa 446  Q
    ||||||||| ||||||| ||| ||||||| ||||| | ||||||  |||||||| |    || | |||| |||| || |||| ||||||||||||| | |    
T  26340469 agtagtacaaaagagaggaattgaagggatcttgtaaagaaaccctaaagaaatcgaggatcccctgctctggttctcaaaccactctggaatccttgca 26340568  T
Q  447 gttccggacaaacgaaacatgatgtctccaacttcatgcagttcctattagtcataaagaacttgtaagtttacaaatataaagtatgctatgaaagatt 546  Q
    |||   | ||||| ||| ||   | ||||||| ||||||||||||| |||||||| || |||||| ||||||| ||| |||||||  ||||||||| ||     
T  26340569 gtttttggcaaacaaaatatagggcctccaacatcatgcagttcctgttagtcatgaataacttgcaagtttagaaagataaagtgcgctatgaaatatg 26340668  T
Q  547 aagttaaatacaagaaaaaacaaaacctgattcagtagcatgtttctacatgaggaacttgaagatttacaattcaatgcagacaagcattttaaatttg 646  Q
    ||||| ||||| ||||||||  ||||||||||  ||||| ||||||||||||| |||||  || ||| ||   | |||||||||||||||||||||| ||    
T  26340669 aagtt-aatacgagaaaaaaataaacctgattatgtagcttgtttctacatgacgaactcaaatattcacggcttaatgcagacaagcattttaaatatg 26340767  T
Q  647 gcggaaaccatctaatttcttgaagac 673  Q
    | |||| |  |||||||||| ||||||    
T  26340768 gtggaatcattctaatttctagaagac 26340794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 673 - 814
Target Start/End: Original strand, 28095803 - 28095944
Alignment:
Q  673 cattccgaaagaattgtgaaactactcttcaataagtctaagtgtgtcatattggcaaaccacttgagaattattcgaaaagattcatctgttcggttgc 772  Q
    ||||||| ||||||||||| | |||| ||  |||||| ||| | ||||| ||| ||||||||||| | ||||||| ||| ||||||| ||||| ||||||    
T  28095803 cattccggaagaattgtgatattactttttgataagtttaaatttgtcacattagcaaaccacttaaaaattattggaagagattcacctgttaggttgc 28095902  T
Q  773 attttctaggcacaagagattgtacatttgtggacaccatgg 814  Q
    ||| | |  |||||||||||| |||||||| |||||||||||    
T  28095903 attctattagcacaagagattttacatttgaggacaccatgg 28095944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 504
Target Start/End: Complemental strand, 28525367 - 28525221
Alignment:
Q  358 agagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcctcgaagttccggacaa 457  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| |||| | || ||||||| | |||| ||||||||||||| | |  ||| | |||    
T  28525367 agagagcaatggaagggaggttgttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatccttgcaaatcctggcaa 28525268  T
Q  458 acgaaacatgatgtctccaacttcatgcagttcctattagtcataaa 504  Q
    || |||| || |  ||||| | ||||||||||||| |||| ||||||    
T  28525267 acaaaacctggttcctccagcctcatgcagttcctgttagccataaa 28525221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 358 - 442
Target Start/End: Complemental strand, 28246497 - 28246413
Alignment:
Q  358 agagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcct 442  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||| |||| | |||||||||| | |||| | |||||||||||    
T  28246497 agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcct 28246413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 358 - 504
Target Start/End: Complemental strand, 28239519 - 28239373
Alignment:
Q  358 agagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcctcgaagttccggacaa 457  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||| |||| | || |||| || | |||| ||||||||||||||  |  ||| || ||    
T  28239519 agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcctcacaaatcctgaaaa 28239420  T
Q  458 acgaaacatgatgtctccaacttcatgcagttcctattagtcataaa 504  Q
    || ||| ||| |  ||||| | ||||||||||||| |||| ||||||    
T  28239419 acaaaatatggttcctccagcctcatgcagttcctgttagccataaa 28239373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 26340175 - 26340373
Alignment:
Q  40 aaggattggtgaactgaatatcctacatgctgctttcttgtttgaatatgtgcattcgacattccttaagggc-aaatggcatgatcgaaaaatcatacc 138  Q
    ||||||||||||  ||||||| ||  ||||| | ||| |||||||||||||||||||||  ||||||||  |  ||||||||||||||||||||| ||      
T  26340175 aaggattggtgat-tgaatattctctatgctacattcctgtttgaatatgtgcattcgagtttccttaaaagtgaaatggcatgatcgaaaaatcttatg 26340273  T
Q  139 taaccagcgcatggttccattcactttttaaaagtacttcatccattcttaccatgtcttgtagtggcaaacaaaatagatatgtatgatcgggttctat 238  Q
    |||||  |||||||||||||||| | || |||| | |||||| || || |||| || | |||||| |||||  || | |||||||| ||||  |||||||    
T  26340274 taacctccgcatggttccattcaatcttgaaaattgcttcatacaatcctaccctgccatgtagttgcaaatcaattggatatgtacgatctcgttctat 26340373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 668
Target Start/End: Original strand, 2170831 - 2170933
Alignment:
Q  566 acaaaacctgattcagtagcatgtttctacatgaggaacttgaagatttacaattcaatgcagacaagcattttaaatttggcggaaaccatctaatttc 665  Q
    ||||||||||| | ||||||||| |||||||||||||| |  | || || || |  ||||||||||||||||||||| ||||||||| || | |||||||    
T  2170831 acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcattttaaacttggcggaatccctgtaatttc 2170930  T
Q  666 ttg 668  Q
    |||    
T  2170931 ttg 2170933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 355 - 442
Target Start/End: Complemental strand, 28142770 - 28142683
Alignment:
Q  355 agaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcct 442  Q
    |||||| ||| |||||||||| ||| | | |||||||||||| ||||| | ||| | |||||||||||| |||| |||||||||||||    
T  28142770 agaagatagccatggaagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctggaatcct 28142683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 442
Target Start/End: Original strand, 2170618 - 2170704
Alignment:
Q  356 gaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcct 442  Q
    ||||||||| |||||||||| | ||| | |||||||||||||||||| | ||| | ||||||| || | |||| |||||||||||||    
T  2170618 gaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct 2170704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 645
Target Start/End: Complemental strand, 28526674 - 28526593
Alignment:
Q  564 aaacaaaacctgattcagtagcatgtttctacatgaggaacttgaagatttacaattcaatgcagacaagcattttaaattt 645  Q
    ||||||||||||||||| ||||||| |||||||||| ||| |  | ||||| ||||| |||| |||||| ||||||| ||||    
T  28526674 aaacaaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaatttaatggagacaaccattttagattt 28526593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 603
Target Start/End: Complemental strand, 28191335 - 28191295
Alignment:
Q  563 aaaacaaaacctgattcagtagcatgtttctacatgaggaa 603  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  28191335 aaaacaaaacctgattcaatagcatgtttctacacgaggaa 28191295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 26876665 - 26876614
Alignment:
Q  370 aagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtg 421  Q
    |||||| ||| ||| |||||||||||||||||||||||| |||| |||||||    
T  26876665 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtg 26876614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 708 - 802
Target Start/End: Original strand, 26340859 - 26340953
Alignment:
Q  708 gtctaagtgtgtcatattggcaaaccacttgagaattattcgaaaagattcatctgttcggttgcattttctaggcacaagagattgtacatttg 802  Q
    |||||||| ||||| |||  |||||||||||||   |||| ||| ||||||||| ||| ||||||||| | |  |||||| ||||||||||||||    
T  26340859 gtctaagtatgtcacattttcaaaccacttgagcgctattggaagagattcatccgttaggttgcattctgttagcacaatagattgtacatttg 26340953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 28328733 - 28328652
Alignment:
Q  358 agagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaat 439  Q
    ||||||| ||||||||  |||||||| ||||||| ||||||||||| | || | |  ||||||||| |||| ||||||||||    
T  28328733 agagagccatggaaggatgcttgttacgaaaccaaaaagaaattgtatttcccatattttggtgctcaaaccactctggaat 28328652  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 28506369 - 28506288
Alignment:
Q  358 agagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaat 439  Q
    ||||||| ||||||||  |||||||| ||||||| ||||||||||| | || | |  ||||||||| |||| ||||||||||    
T  28506369 agagagccatggaaggatgcttgttacgaaaccaaaaagaaattgtatttcccatattttggtgctcaaaccactctggaat 28506288  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 563 - 675
Target Start/End: Complemental strand, 16694095 - 16693983
Alignment:
Q  563 aaaacaaaacctgattcagtagcatgtttctacatgaggaacttgaagatttacaattcaatgcagacaagcattttaaatttggcggaaaccatctaat 662  Q
    |||| ||||||||||||||||||||| |||| |||||||||    |||||| ||| | |||||||||||| | |||||||||||| |||| || ||||||    
T  16694095 aaaagaaaacctgattcagtagcatgcttctgcatgaggaagacaaagattcacattgcaatgcagacaaacgttttaaatttggaggaatccctctaat 16693996  T
Q  663 ttcttgaagacat 675  Q
    |||| ||||||||    
T  16693995 ttctcgaagacat 16693983  T

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Target: scaffold0038 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 358 - 442
Target Start/End: Complemental strand, 46659 - 46575
Alignment:
Q  358 agagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcct 442  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||| |||| | |||||||||| | |||| | |||||||||||    
T  46659 agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcct 46575  T

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Target: scaffold0038; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 358 - 504
Target Start/End: Complemental strand, 39681 - 39535
Alignment:
Q  358 agagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcctcgaagttccggacaa 457  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||| |||| | || |||| || | |||| ||||||||||||||  |  ||| || ||    
T  39681 agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcctcacaaatcctgaaaa 39582  T
Q  458 acgaaacatgatgtctccaacttcatgcagttcctattagtcataaa 504  Q
    || ||| ||| |  ||||| | ||||||||||||| |||| ||||||    
T  39581 acaaaatatggttcctccagcctcatgcagttcctgttagccataaa 39535  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 55270 - 55355
Alignment:
Q  357 aagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcct 442  Q
    ||||||||  ||||||||||||||||| ||||||| |||||||| || |||| | || ||||||||| |||| |||||||||||||    
T  55270 aagagagccgtggaagggagcttgttacgaaaccaaaaagaaatcgtatgtcccatgttttggtgctcaaaccactctggaatcct 55355  T

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Target: scaffold0286 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 668
Target Start/End: Complemental strand, 12430 - 12328
Alignment:
Q  566 acaaaacctgattcagtagcatgtttctacatgaggaacttgaagatttacaattcaatgcagacaagcattttaaatttggcggaaaccatctaatttc 665  Q
    ||||||||||| | ||||||||| |||||||||||||| |  | || || || |  ||||||||||||||||||||| ||||||||| || | |||||||    
T  12430 acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcattttaaacttggcggaatccctgtaatttc 12331  T
Q  666 ttg 668  Q
    |||    
T  12330 ttg 12328  T

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Target: scaffold0286; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 442
Target Start/End: Complemental strand, 12643 - 12557
Alignment:
Q  356 gaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctttggtgcttaaacgactctggaatcct 442  Q
    ||||||||| |||||||||| | ||| | |||||||||||||||||| | ||| | ||||||| || | |||| |||||||||||||    
T  12643 gaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct 12557  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 633
Target Start/End: Complemental strand, 3282598 - 3282519
Alignment:
Q  552 aaatacaagaaaaaacaaaacctgattcagtagcatgtttctacatgaggaacttgaagatttacaattcaatgcagacaag 633  Q
    |||||||||||| | |||||||||||||||||||||| ||||||| || |||||  |||||| |||||| |||||| |||||    
T  3282598 aaatacaagaaaca-caaaacctgattcagtagcatgcttctacacga-gaactcaaagattcacaatttaatgcaaacaag 3282519  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 814
Target Start/End: Complemental strand, 3282476 - 3282343
Alignment:
Q  681 aagaattgtgaaactactcttcaataagtctaagtgtgtcatattggcaaaccacttgagaattattcgaaaagattcatctgttcggttgcattttcta 780  Q
    ||||||||||||| || ||||  |||||| ||| | ||||| ||| | ||||||| | |||| |||| ||| ||||||||||||| |||| || ||| |     
T  3282476 aagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttacaatttgtt 3282377  T
Q  781 ggcacaagagattgtacatttgtggacaccatgg 814  Q
     |||||| |  ||||||||||| ||||| |||||    
T  3282376 agcacaataacttgtacatttgaggacaacatgg 3282343  T

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