View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14626_low_10 (Length: 283)

Name: NF14626_low_10
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14626_low_10
NF14626_low_10
[»] chr2 (1 HSPs)
chr2 (13-277)||(3001450-3001715)
[»] chr4 (1 HSPs)
chr4 (13-65)||(37443770-37443822)
[»] chr5 (4 HSPs)
chr5 (13-67)||(29075852-29075906)
chr5 (13-64)||(29173561-29173612)
chr5 (13-65)||(12669543-12669595)
chr5 (25-65)||(35023890-35023930)
[»] chr7 (4 HSPs)
chr7 (14-65)||(4566382-4566432)
chr7 (13-68)||(30579406-30579461)
chr7 (13-67)||(24438198-24438252)
chr7 (13-65)||(9183144-9183196)
[»] chr8 (3 HSPs)
chr8 (13-59)||(20994416-20994462)
chr8 (13-66)||(43594270-43594323)
chr8 (13-49)||(3305157-3305193)
[»] scaffold0160 (1 HSPs)
scaffold0160 (28-64)||(22317-22353)
[»] chr6 (1 HSPs)
chr6 (13-65)||(28364008-28364060)
[»] chr1 (2 HSPs)
chr1 (13-65)||(3799977-3800029)
chr1 (13-65)||(52336727-52336779)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 3001450 - 3001715
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaatatggttaacattttccttaaaatatttagaagttggtagtttaaaa 112  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3001450 cgattatctctggtgccagtttatgtgggctaatttaggttcttaaaaaaaaaaatggttaacattttccttaaaatatttagaagttggtagtttaaaa 3001549  T
Q  113 tttatttataaagggtaaaaaagaattt-agttaaaacaataatgagttataaacttctcttttcaaaagaaatgcaaatttaatttagtgatttatcgg 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3001550 tttatttataaagggtaaaaaagaattttagttaaaacaataatgagttataaacttctcttttcaaaagaaatacaaatttaatttagtgatttatcgg 3001649  T
Q  212 ctatcaattctgaattgtactaaaattatactaattgaatccgctaatttttctattatagtatta 277  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3001650 ctatcaactctgaattgtactaaaattatactaattcaatccgctaatttttctattatagtatta 3001715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 37443770 - 37443822
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaa 65  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  37443770 cgattatctctggtgccaatttatgtgggctaatttagtttcttaaacaaaaa 37443822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 29075852 - 29075906
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaata 67  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||    
T  29075852 cgattctctctggtgccaatttagatgggctaatttagcttcttcaaaaaaaata 29075906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 29173561 - 29173612
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaa 64  Q
    ||||||||||||||| |||||||  ||||||||||||| |||||||| ||||    
T  29173561 cgattatctctggtgtcaatttaggtgggctaatttagcttcttaaaaaaaa 29173612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 12669543 - 12669595
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaa 65  Q
    ||||| ||||||||| |||||||  ||||||| |||||||||||||| |||||    
T  12669543 cgattctctctggtgtcaatttaggtgggctagtttagtttcttaaaaaaaaa 12669595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 35023890 - 35023930
Alignment:
Q  25 gtgccaatttatatgggctaatttagtttcttaaagaaaaa 65  Q
    ||||||||||| ||||||||||||| ||||||||| |||||    
T  35023890 gtgccaatttagatgggctaatttaatttcttaaaaaaaaa 35023930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 4566432 - 4566382
Alignment:
Q  14 gattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaa 65  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||| |||||    
T  4566432 gattctctctggtgccaatttagatgg-ctaatttagtttcttaaaaaaaaa 4566382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 30579406 - 30579461
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaatat 68  Q
    ||||| |||||||||||||||||  ||||||||||||| ||||| || ||||||||    
T  30579406 cgattttctctggtgccaatttaggtgggctaatttagcttcttcaaaaaaaatat 30579461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 24438252 - 24438198
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaata 67  Q
    ||||| ||||||||| ||||||  |||||||||||||| |||||||| |||||||    
T  24438252 cgattctctctggtgtcaatttgaatgggctaatttagcttcttaaaaaaaaata 24438198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 9183196 - 9183144
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaa 65  Q
    ||||||||||||||| ||||||   ||||||||||||||||||| || |||||    
T  9183196 cgattatctctggtgtcaatttgggtgggctaatttagtttcttcaaaaaaaa 9183144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 20994462 - 20994416
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaa 59  Q
    |||||||||||||| |||||||  |||||||||||||| ||||||||    
T  20994462 cgattatctctggtaccaatttggatgggctaatttagcttcttaaa 20994416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 43594323 - 43594270
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaat 66  Q
    ||||| ||||| ||| ||||||  ||||||||||||||||||||||| ||||||    
T  43594323 cgattctctctagtgtcaatttggatgggctaatttagtttcttaaaaaaaaat 43594270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 3305193 - 3305157
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaattta 49  Q
    |||||||||||||||||||||||  ||||||||||||    
T  3305193 cgattatctctggtgccaatttaggtgggctaattta 3305157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 22353 - 22317
Alignment:
Q  28 ccaatttatatgggctaatttagtttcttaaagaaaa 64  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  22353 ccaatttttatgggctaatttagtttcttaaaaaaaa 22317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 28364008 - 28364060
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaa 65  Q
    ||||||||||||||| ||||||  ||||||||||||| |||||| || |||||    
T  28364008 cgattatctctggtgtcaatttggatgggctaatttaatttcttcaaaaaaaa 28364060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 3799977 - 3800029
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaa 65  Q
    ||||| ||||| |||||||||||  ||||||||||||| |||||||| |||||    
T  3799977 cgattctctctagtgccaatttaggtgggctaatttagcttcttaaaaaaaaa 3800029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 52336779 - 52336727
Alignment:
Q  13 cgattatctctggtgccaatttatatgggctaatttagtttcttaaagaaaaa 65  Q
    ||||||||||||||| ||||||  ||||||||||||| |||||| || |||||    
T  52336779 cgattatctctggtgtcaatttggatgggctaatttaatttcttcaaaaaaaa 52336727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University