View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14626_low_13 (Length: 259)

Name: NF14626_low_13

Description: NF14626

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14626_low_13

[»] chr8 (3 HSPs)

Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 233; E-Value: 1e-129

Query Start/End: Original strand, 15 - 259

Target Start/End: Original strand, 32912066 - 32912310

Alignment:

Q	15	caaaggtcacagattcagggaaaaaatatgcagcaggtacatagttgttcattgacattaatccttattggtatatattaattcaactatagcttacaat	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	32912066	caaaggtcacagattcagggaaaaaatatgcagcaggtacatagttgttcattgacattaatccttattggtatatattaattcaaatatagcttacaat	32912165	T

Q	115	gtttatcattttccatatagccgcagctgatcaggcttcaagaacagctgccaatgcagctagtgcaactggtggaaccaagcaacagaatcccaaggcc	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32912166	gtttatcattttccatatagccgcagctgatcaggcttcaagaacggctgccaatgcagctagtgcaactggtggaaccaagcaacagaatcccaaggcc	32912265	T

Q	215	caggaagtaggtggaaataatgctaatgttgctaaagataaagaa	259	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32912266	caggaagtaggtggaaataaagctaatgttgctaaagataaagaa	32912310	T

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Target: chr8; HSP #2

Raw Score: 49; E-Value: 4e-19

Query Start/End: Original strand, 175 - 259

Target Start/End: Original strand, 32913107 - 32913191

Alignment:

Q	175	tagtgcaactggtggaaccaagcaacagaatcccaaggcccaggaagtaggtggaaataatgctaatgttgctaaagataaagaa	259	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32913107	tagtgcatctggtggaaccaagcaccgaaatcctaaggccccggaagtaggttgaaataaagccaatgttgctaaagataaagaa	32913191	T

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Target: chr8; HSP #3

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 192 - 259

Target Start/End: Original strand, 32912513 - 32912580

Alignment:

Q	192	ccaagcaacagaatcccaaggcccaggaagtaggtggaaataatgctaatgttgctaaagataaagaa	259	Q
		\|\|\|\|\| \|\|\|\| \| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32912513	ccaagaaacaaagtccaaaggccccggaagcaggtggaaataaagctaatgttgctaaagataaagaa	32912580	T

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