View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14626_low_16 (Length: 242)

Name: NF14626_low_16
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14626_low_16
NF14626_low_16
[»] chr5 (10 HSPs)
chr5 (1-230)||(13393489-13393718)
chr5 (2-155)||(13389157-13389310)
chr5 (2-168)||(13385323-13385489)
chr5 (1-156)||(13419436-13419591)
chr5 (2-168)||(13413092-13413258)
chr5 (1-229)||(13426327-13426555)
chr5 (4-177)||(13453943-13454116)
chr5 (1-157)||(13446987-13447143)
chr5 (36-157)||(13379009-13379130)
chr5 (2-100)||(13373179-13373277)
[»] chr4 (1 HSPs)
chr4 (1-180)||(47601258-47601437)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13393718 - 13393489
Alignment:
Q  1 taccaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13393718 taccaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaat 13393619  T
Q  101 gtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgatgcttccatcactgtatttggcactatatgtatttgtttgttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13393618 gtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgatgcttccatcactgtatttggcactatatgtatttgtttgttta 13393519  T
Q  201 gggcaataattctcaagattttcctcacag 230  Q
    ||||||||||||||||||||||||||||||    
T  13393518 gggcaataattctcaagattttcctcacag 13393489  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 13389310 - 13389157
Alignment:
Q  2 accaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatg 101  Q
    |||||| || ||||||||| |||||| ||||||||| |||||||| || || |||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  13389310 accaggtttatcgagtccataatatctaagaggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatg 13389211  T
Q  102 tgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtg 155  Q
    ||||| |  |||| |||||||||||||| ||||||||| || ||||||||||||    
T  13389210 tgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtg 13389157  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 13385489 - 13385323
Alignment:
Q  2 accaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatg 101  Q
    |||||| |||||||||||||| |||| ||||||||| |||||||| || || |||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  13385489 accaggtttgtcgagtccaaagtatctaagaggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatg 13385390  T
Q  102 tgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgatgcttccatcac 168  Q
    ||||| |  |||| |||| |  |||||| ||||||||| || ||||| | ||||||| |||||||||    
T  13385389 tgaaccacgaagttctcagccacaaccaatgagtcagaataacctccgtgtgtgatggttccatcac 13385323  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 13419436 - 13419591
Alignment:
Q  1 taccaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaat 100  Q
    ||||||||||||||||| |||||| |||||||||||||||||| || || || || ||||| |||||| | ||||  ||||| ||||||| |||||||||    
T  13419436 taccaggcttgtcgagttcaaaatgtcgaagaggactatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaat 13419535  T
Q  101 gtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtga 156  Q
    | |||  | ||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  13419536 gcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtga 13419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 13413092 - 13413258
Alignment:
Q  2 accaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatg 101  Q
    ||||||||| |||||||||||| |||||||||||||||| || || | ||| ||||||||||||||| ||||| ||||||| |||| |   |||||||||    
T  13413092 accaggcttatcgagtccaaaaaatcgaagaggactatatacggtgacaccagcacaaaggagaggaccagcaaattcaagaggtatgttgtcaggaatg 13413191  T
Q  102 tgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgatgcttccatcac 168  Q
     |||  | ||||||||| ||||||||||||||||| ||||| |||||||| |||| | |||||||||    
T  13413192 cgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcac 13413258  T

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Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 13426327 - 13426555
Alignment:
Q  1 taccaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaat 100  Q
    |||||||||||||||||  |||||  ||||||||||||||||| || |  || || ||||| |||||| | |||   ||||| ||||||| |||||||||    
T  13426327 taccaggcttgtcgagttgaaaatgacgaagaggactatacactgtgactccagcgcaaagaagaggaccggcaacatcaagaggtaagctatcaggaat 13426426  T
Q  101 gtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgatgcttccatcactgtatttggcactatatgtatttgtttgttta 200  Q
    | |||  | ||||||||||||||||||||||||||| || || ||||||||||||| ||| |||||||  || || |||| | |||||  ||||||||      
T  13426427 gcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaactgtttgttgg 13426526  T
Q  201 gggcaataattctcaagattttcctcaca 229  Q
    ||||| ||||||||||||| |||| ||||    
T  13426527 gggcagtaattctcaagatcttccgcaca 13426555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 13453943 - 13454116
Alignment:
Q  4 caggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtg 103  Q
    ||||||||||||||||||||| ||||||||||||||| || || || || |||||||||||||||||||| |  ||||| |||||   ||| |||||| |    
T  13453943 caggcttgtcgagtccaaaatgtcgaagaggactatatacggttatcccagcacaaaggagaggagcagctgcatcaagaggtaactgatctggaatgcg 13454042  T
Q  104 aactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgatgcttccatcactgtatttgg 177  Q
    ||  | ||||||||| || | |||||||||||||||| | |||||||  ||| || ||||||||||||||||||    
T  13454043 aaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccatgagtgctggttccatcactgtatttgg 13454116  T

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Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 13446987 - 13447143
Alignment:
Q  1 taccaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  || || ||||| |||||| | |||   ||||| ||||||| |||||||||    
T  13446987 taccaggcttgtcgagtccaaaatgtcgaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaat 13447086  T
Q  101 gtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 157  Q
    | |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13447087 gcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 13447143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 13379009 - 13379130
Alignment:
Q  36 ctatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagt 135  Q
    |||||||| || || || ||||||||||||||||| ||||  ||||||| |||| |||| |||||  | || |||||||| || ||  ||||||| | ||    
T  13379009 ctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgt 13379108  T
Q  136 cagagtaccctccatatgtgat 157  Q
    ||||||| ||||||||||||||    
T  13379109 cagagtagcctccatatgtgat 13379130  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 13373179 - 13373277
Alignment:
Q  2 accaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaat 100  Q
    |||||||||||  ||||||||||||   | ||| ||||| || || || || |||||||| ||||||||||| |  |||||||||||| ||||||||||    
T  13373179 accaggcttgttaagtccaaaatatttcaaagggctatatactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaat 13373277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 47601258 - 47601437
Alignment:
Q  1 taccaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaat 100  Q
    ||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| || ||||||||| || ||||| |||||    
T  47601258 taccaggtttatcgagtccaaaatatcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaat 47601357  T
Q  101 gtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgatgcttccatcactgtatttggcac 180  Q
    |||||| | ||||||||| ||| ||||||||||||||||||| ||||| |||||| || | |||||||  ||||||||||    
T  47601358 gtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcac 47601437  T

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