View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14626_low_2 (Length: 534)
Name: NF14626_low_2
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14626_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 30481256 - 30481528
Alignment:
| Q |
16 |
aatataattgcttttgtcctttgtcaagtttgtacctagttgttttttctgctgtaaacgcgtcccaaacacgtttatttttatatcaaacaatattatt |
115 |
Q |
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| T |
30481256 |
aatataattgcttttgtcctttgtgaagtttgtacctagttgttttttctgctgtaaacgcgtcccaaacacgtttatttttatatcaaacaatattatt |
30481355 |
T |
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| Q |
116 |
atgatctttatgaaattcaaactatgaagattctaaatattcttcttgcttttatttgtccatgtaattttctaccattttctttatgcggttaaaacgg |
215 |
Q |
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| T |
30481356 |
atgatctttatgaaattcaaactatgaacattctaaatattcttcttgcttttatttgttcatgtaattttctaccattttctttatgcggttaaaacgg |
30481455 |
T |
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| Q |
216 |
tttaactaagtattatacttttgtggttaattaatattttatcctttcactttcatgtgattaattattacat |
288 |
Q |
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| T |
30481456 |
tttaactaagtattctacttttgtggttaattaatattttatcctttcactttcatgtgattaattattacat |
30481528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 348 - 518
Target Start/End: Original strand, 30481588 - 30481758
Alignment:
| Q |
348 |
gattcctgcatgtatctaagtctataatattaaatacatgcacatgactgtaacatacaacattgaaacattgttttgggcttttgcttgtcatgagctc |
447 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30481588 |
gattcctgcatgtatctaagtctataatattaaatacatacacatgactgtaccatacaacattgaaacattgttttgggcttttgcttgtcatgagctc |
30481687 |
T |
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| Q |
448 |
gtaagggaaagcttgttgcattcatttgctacttcttttgtgattgataattgaggttacttccataccat |
518 |
Q |
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| T |
30481688 |
gtaagggaaagcttgttgcattcatttgctacttcttttgtgattgataattgaggttacttccataccat |
30481758 |
T |
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