View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14626_low_21 (Length: 220)
Name: NF14626_low_21
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14626_low_21 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 42593716 - 42593512
Alignment:
| Q |
16 |
gagcacttttggaaagtctaattgagaagccaatttcctaccttgacaaagcttctctttttgtctttacacttgttgcacttgtgttgttcattcgcct |
115 |
Q |
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| T |
42593716 |
gagcacttttggaaagtctaattgagaagccaatttcctaccttgacaaagcttctctttttgtctttacacttgttgcacttgtgttgttcattcgcct |
42593617 |
T |
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| Q |
116 |
aatatgtaaaaaagatgtggatggaggagggttgccagatattaaaggtaataatgtttcagttggcttattgacgcaactccttgagaatattttctcg |
215 |
Q |
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| T |
42593616 |
aatatgtaaaaaagatgtggatggaggagggttgccagatattaaaggtaataatgtttcagttggcttattgacacaactccttgagaatattttctcg |
42593517 |
T |
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| Q |
216 |
agacc |
220 |
Q |
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||||| |
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| T |
42593516 |
agacc |
42593512 |
T |
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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 4091082 - 4091272
Alignment:
| Q |
21 |
cttttggaaagtctaattgagaagccaatttcctaccttgacaaagcttctctttttgtctttacacttgttgcacttgtgttgttcattcgcctaatat |
120 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| | |||||| ||||| ||||||||| || ||| | |
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| T |
4091082 |
cttttggaaaaactaattgagaagccgatttcctaccttgacaaagcttctctttttatctttacattggttgcatttgtggtgttcattcaccaaattt |
4091181 |
T |
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| Q |
121 |
gtaaaaaagatgtggatggaggagggttgccagatattaaaggtaataatgtttcagttggcttattgacgcaactccttgagaatattttctcgagacc |
220 |
Q |
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| T |
4091182 |
gtgaaaaagatggagatggtgatggattgccagatatgaaa---------gtttcagttggcttgttgatggaactccttgagaatattttgttgagacc |
4091272 |
T |
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