View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14626_low_3 (Length: 476)
Name: NF14626_low_3
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14626_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 4844696 - 4845142
Alignment:
| Q |
18 |
gacacaaggtatagcactcgtcaccgatatgcatgacacaaagttcgaagagaaatcagctcaggttcaataacgctccaaatccattggaaatcatcta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4844696 |
gacacaaggtatagcactcgtcaccgatatgcatgacacaaagttcgaagagaaatcagctcaggttcaataacgctccaaatccattggaaatcatcta |
4844795 |
T |
|
| Q |
118 |
ttgcaaatatgatatcttccgaccatttcaaagtagtcggtttcatactagtctcccaaagacctcatatgaccatttcaaagtagtctatttcatgaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4844796 |
ttgcaaatatgatatcttccgaccatttcaaagtagtcggtttcatactagtctcccaaagacctcatatgaccatttcaaagtagtctatttcatgaca |
4844895 |
T |
|
| Q |
218 |
aagtctagtgttgttttcacacaaatttcccttctacttcttaatgtaatgtatatataacaataaataagtgcaacttcaagcatcctaacactcaaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4844896 |
aagtctagtgttgttttcacacaaatttcccttctacttctcaatctaatgtatatataacaataaataagtgcaacttcaagcatcctaacaatcaaca |
4844995 |
T |
|
| Q |
318 |
agaaaaacaaaatctactcttcttcactctattctcacacaacacaactatggcaaaatccataaacaaaaaatttcacactaaaatcaccctactatct |
417 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4844996 |
agaaaaacaaaatctagtcttcttcactctattctcacacaacacaactatgccaaactccataaacaaaaaatttcacactaaaatcaccctactatct |
4845095 |
T |
|
| Q |
418 |
atctatttgtttttgttccatctagttattaactcatacaaccctga |
464 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
4845096 |
atctatttggttttgttccctctagttattaactcatacaaccctga |
4845142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 185 - 464
Target Start/End: Original strand, 4710940 - 4711214
Alignment:
| Q |
185 |
tatgaccatttcaaagtagtctatttcatgacaaag-tctagtgttgttttcacacaaatttcccttctacttcttaatgtaatgtatatataacaataa |
283 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4710940 |
tatgaccatttcaaagtagtctatttcatgacaagtctctagtgttgttt-cacacaaatttcccttctacttcttaatgtaatgtatatataacaataa |
4711038 |
T |
|
| Q |
284 |
ataagtgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattctcacacaacacaactatggcaaaatccataaa |
383 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||||| |
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| T |
4711039 |
ataaatgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattttc-----acataactatggcaaactccataaa |
4711133 |
T |
|
| Q |
384 |
caaaaaatttcacactaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaaccctga |
464 |
Q |
| |
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| ||||||||||||||||||| |||||||||||| |||||||| | ||||||| ||||||| |||||||||||||||||| |
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| T |
4711134 |
cgaaaaatttcacactaaaattaccctactatctctctatttgctcttgttccctctagttgctaactcatacaaccctga |
4711214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 462
Target Start/End: Original strand, 4696210 - 4696309
Alignment:
| Q |
363 |
aactatggcaaaatccataaacaaaaaatttcacactaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaaccct |
462 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| ||| |||||| || |||| | ||||||| ||||||| || ||||||| ||||| |
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| T |
4696210 |
aactatggcaaactccagaaacaaaaaatttcacactaaaatcatcctgctatctctcattttgctattgttccctctagttgctacctcatacgaccct |
4696309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 4709928 - 4709983
Alignment:
| Q |
18 |
gacacaaggtatagcactcgtcaccgatatgcatgacacaaagttcgaagagaaat |
73 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
4709928 |
gacacaaggtatagcaccagtcaccgatatgcatgacacaaagttcaaagagaaat |
4709983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 417
Target Start/End: Complemental strand, 4865079 - 4864940
Alignment:
| Q |
273 |
tataacaataaataagtgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattctcacacaacacaactatggca |
372 |
Q |
| |
|
||||| ||||||||| || |||||| ||||| | || |||||||| || |||| |||| | ||||||||| || |||||||||||| ||||||| |
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|
| T |
4865079 |
tataagaataaataaatgtaacttctagcattccaaacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaac-----tatggca |
4864985 |
T |
|
| Q |
373 |
aaatccataaacaaaaaatttcacactaaaatcaccctactatct |
417 |
Q |
| |
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|| || |||||||| ||| || ||||||||||||||||||||||| |
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| T |
4864984 |
aactcgataaacaagaaactttacactaaaatcaccctactatct |
4864940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 4673776 - 4673721
Alignment:
| Q |
359 |
acacaactatggcaaaatccataaacaaaaaatttcacactaaaatcaccctacta |
414 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
4673776 |
acacagctatggcaaactccataaacaaaaaaaattacacaaaaatcaccctacta |
4673721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 464
Target Start/End: Complemental strand, 4654559 - 4654461
Alignment:
| Q |
366 |
tatggcaaaatccataaacaaaaaatttcacactaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaaccctga |
464 |
Q |
| |
|
||||||||| |||||||||||||| || |||| ||||| | | |||||||| ||| |||| | ||||||| |||| || | |||||||||||||||| |
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| T |
4654559 |
tatggcaaactccataaacaaaaacatttacacaaaaatgagcatactatctctctttttgctattgttccctctaattgcttactcatacaaccctga |
4654461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 464
Target Start/End: Complemental strand, 4637924 - 4637819
Alignment:
| Q |
359 |
acacaactatggcaaaatccataaacaaaaaatttcacactaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaa |
458 |
Q |
| |
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||||| |||||||||| |||||||||||||| || |||| ||||||| | ||||||| ||| |||| | | |||| | ||||| |||||||||||| |
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| T |
4637924 |
acacagctatggcaaactccataaacaaaaacatttacacaaaaatcagcatactatccctctttttgctacttttccctttagttgctaactcatacaa |
4637825 |
T |
|
| Q |
459 |
ccctga |
464 |
Q |
| |
|
|||||| |
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|
| T |
4637824 |
ccctga |
4637819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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