View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14626_low_5 (Length: 421)
Name: NF14626_low_5
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14626_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 14 - 390
Target Start/End: Complemental strand, 41003777 - 41003401
Alignment:
| Q |
14 |
atcaactctttctctcttggttttcctatcttacacatacatatataaacccctcttttttcatatattctttctttcattctcacttccctaaatatta |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41003777 |
atcaactctttctctcttggttttcctatcttatacatacatatataaacccctcttttttcatatattctttcattcattctcacttccctaaatatta |
41003678 |
T |
|
| Q |
114 |
ttaatacaaatatggctcctatggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41003677 |
ttaatacaaatatggctcctatggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagcta |
41003578 |
T |
|
| Q |
214 |
tgccaacaattcccaagcacaggtacactaatatctaatcttatttttctaatcctaataaatatctaatatcactattaaacaaggtaaaattagggac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41003577 |
tgccaacaattcccaagcacaggtacactaatatctaatcttatttttctaattctaataaatatctaatatcactattaaacaaggtaaaattagggac |
41003478 |
T |
|
| Q |
314 |
aaaaatatgtgacacatgaaaaatgaaatccctctccaatttcctcttactaatttaagtgatattcattcacatag |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41003477 |
aaaaatatgtgacacatgaaaaatgaaatccctctccaatttcctcttactaatttaagtgatattcattcacatag |
41003401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 390
Target Start/End: Complemental strand, 20856080 - 20855704
Alignment:
| Q |
14 |
atcaactctttctctcttggttttcctatcttacacatacatatataaacccctcttttttcatatattctttctttcattctcacttccctaaatatta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20856080 |
atcaactctttctctcttggttttcctatcttacacatacatatataaacccctcttttttcatatattctttcattcattctcacttccctaaatatta |
20855981 |
T |
|
| Q |
114 |
ttaatacaaatatggctcctatggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20855980 |
ttaatacaaatatggctcctatggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagcta |
20855881 |
T |
|
| Q |
214 |
tgccaacaattcccaagcacaggtacactaatatctaatcttatttttctaatcctaataaatatctaatatcactattaaacaaggtaaaattagggac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20855880 |
tgccaacaattcccaagcacaggtacactaatatctaatcttatttttctaattctaataaatatctaatatcactattaaacaaggtaaaatttgggac |
20855781 |
T |
|
| Q |
314 |
aaaaatatgtgacacatgaaaaatgaaatccctctccaatttcctcttactaatttaagtgatattcattcacatag |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20855780 |
aaaaatatgtgacacatgaaaaatgaaatccctctccaatttcctcttactaatttaagtgatattcatttacatag |
20855704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 21559051 - 21558946
Alignment:
| Q |
134 |
atggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagctatgccaacaattcccaagcac |
233 |
Q |
| |
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|||| ||| |||||||| || |||||| ||||||| |||| |||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
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| T |
21559051 |
atgggagacaatgttgtagtatccaatatggagctagagaggttgcttagcatgaaaggtggtaaaggagaggctagctatgccaacaattcccaagcac |
21558952 |
T |
|
| Q |
234 |
aggtac |
239 |
Q |
| |
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|||||| |
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| T |
21558951 |
aggtac |
21558946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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