View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14626_low_8 (Length: 309)
Name: NF14626_low_8
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14626_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 42592950 - 42593245
Alignment:
| Q |
14 |
catttccaatattgtggatgcagccccactccagtgcaagtgcataacttgttcattgtccctaacgtttctcaccaaaactccaccacccacttggtta |
113 |
Q |
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| T |
42592950 |
catttccaatattgtggatgcagccccactccagtgcaagtgcataacttgttcattgtccctaacgtttctcaccaaaactccaccaccctcttggtta |
42593049 |
T |
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| Q |
114 |
gagtccagtttgccatgttcaagaatgtgaaaattttctctgaaagattcaatgtccatttcccatgttttttctgccaagtaaacaaacgaattggaca |
213 |
Q |
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| T |
42593050 |
gaatccagtttgccatgttcaagaatgtgaaaattttctctgaaagattcaatgtccatttcccatgttttttctgccaaggaaacaaacgaattggaca |
42593149 |
T |
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| Q |
214 |
taggcgaaggagacagtcttgatgcaagaactgataaagcaactccttgtttaagcttgtcaagtacaactggacatgtttctgattcctcaacct |
309 |
Q |
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| T |
42593150 |
taggcgaaggagacagtcttgatgcaagaactgataaagcaactccttgtttaagcttgtcaagtacaactggacatgtttctgattcctcaacct |
42593245 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 4091826 - 4091557
Alignment:
| Q |
16 |
tttccaatattgtggatgcagccccactccagtgcaagtgcataacttgttcattgtccctaacgtttctcaccaaaactccaccacccacttggttaga |
115 |
Q |
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| T |
4091826 |
tttccaatattgtggatgcagaaccactccagtgcaaatgcagaacttgttcagtacctaaaacttctttcaccaaaactccacttccccctttgtcaga |
4091727 |
T |
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| Q |
116 |
gtccagtttgccatgttcaagaatgtgaaaattttctctgaaagattcaatgtccatttcccatgttttttctgccaagtaaacaaacgaattggacata |
215 |
Q |
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| T |
4091726 |
attcagtttgttatgcttaaaaatgtcaaatctttctatgaaagaattagtgtccatttcacactttgtttctgcccaagaaacaagtgcactggacctc |
4091627 |
T |
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| Q |
216 |
ggcgaaggagacagtcttgatgcaagaactgataaagcaactccttgtttaagcttgtcaagtacaactg |
285 |
Q |
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| T |
4091626 |
ggagaaagagacagttctggtgaaataatcgataaaacaactccttctttaagcttgtcaagcacaactg |
4091557 |
T |
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