View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14626_low_9 (Length: 309)
Name: NF14626_low_9
Description: NF14626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14626_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 5459252 - 5458980
Alignment:
| Q |
18 |
agacctagcaaaaacatgaccaaatgtcatatggtgttcaaaacctcaaatagtcgaaaaaagtgttaattaagttgtttatccaaaaaatgctatgcag |
117 |
Q |
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| T |
5459252 |
agacctagcaaaaacatgaccaaatgtcatatggtgttcaaaacctcaaatagtcgaaaaaagtgttaattaagttgtttatccaaaaaacgctatgcag |
5459153 |
T |
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| Q |
118 |
tattgacaaaggcctggatggttagatacctgtatgatctcaaggagaacgctatttcctgtagcaagttgaattctatatagtggcaaaccagcagcga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5459152 |
tattgacaaaggcctggatggttagatacctgtatgatctcaaggagaacactatttcctgtagcaacttgaattctatatagtggcaaaccagcagcga |
5459053 |
T |
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| Q |
218 |
aaattacggtacccaaaaatatagctatggtgccaataccaaatccccaatcccatcctttgttgatttgtat |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5459052 |
aaattacggtacccaaaaatatagctatggtgccaataccaaatccccaatcccatcctttgttgatttgtat |
5458980 |
T |
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