View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_high_2 (Length: 440)
Name: NF14627_high_2
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 34860715 - 34861138
Alignment:
| Q |
17 |
actatctcaactgcaagccttcaatctgttgatacattcacgagatcgtcttctttcttgattgttgatccagcaaggaatctatttgtaagatatctat |
116 |
Q |
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| T |
34860715 |
actatctcaactgcaagccttcaatctgttgatacattcacgagatcgtcttctttcttgatcgttgatccagcaaggaatctatttgtaagatatctat |
34860814 |
T |
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| Q |
117 |
agcatatatatatgagtgtttaacatttacacaaactaccaaaataccttacgttcttgtattgataatagagagaataccacattgatgaggttatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860815 |
agcatatatatatgagtgtttaacatttacacaaactaccaaaataccttacgttcttgtattgataatagagagaataccacattgatgaggttatttt |
34860914 |
T |
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| Q |
217 |
ttgttaaccatgcagagaattctgtgccatattcaagtgtttgcactagctagatggttatcagttaagtggccagttgaattttatgaattttcaaggc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860915 |
ttgttaaccatgcagagaattctgtgccatattcaagtgtttgcactagctagatggttatcagttaagtggccagttgaattttatgaattttcaaggc |
34861014 |
T |
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| Q |
317 |
atttgcaatggaccataccctctttttctgtgccgtgggaatctggacctatgagcctgttcatggtaggatctagtccttttggaagctctagttcctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34861015 |
atttgcaatggaccataccctctttttctgtgccgtgggaatctggacctatgagcctgttcatggtaggatctagtccttttggaagctctagttcctc |
34861114 |
T |
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| Q |
417 |
cgctaaagctttggcaacaattcc |
440 |
Q |
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| T |
34861115 |
cgctaaagctttggcaacaattcc |
34861138 |
T |
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