View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_high_5 (Length: 387)
Name: NF14627_high_5
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 27358837 - 27359196
Alignment:
| Q |
19 |
ggattaactgacggaggcgaagtgttggagcaaagtcaccgaagtcatcaacggaagcggtggtatcagcatcgacgaagagcaccccctgaccatcgca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27358837 |
ggattaactgacggaggcgaagtgttggagcaaagtcactgaagtcatcaacggaagcggtggtatcagcatcgacgaagagcaccccttgaccatcgca |
27358936 |
T |
|
| Q |
119 |
ataaagctcaacacgaccatcatcatctcggcggagacgggctgccattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagca |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27358937 |
ataaagctcaacacgaccatcttcatctcggcggagacgggctgccattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagca |
27359036 |
T |
|
| Q |
219 |
tcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagttccataacgcctttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27359037 |
tcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagttccataacgcctttc |
27359136 |
T |
|
| Q |
319 |
gtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctctg |
378 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27359137 |
gtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctctg |
27359196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 45408269 - 45407908
Alignment:
| Q |
19 |
ggattaactgacggaggcgaagtgttggagcaaagtcaccgaagtcatcaacggaagcggtggtatcagcatcgacgaagagcaccccctgaccatcgca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45408269 |
ggattaactgacggaggcgaagtgttggagcaaagtcaccgaagtcatcaacggaagcggtggtatcagcatcgacgaagagcaccccttgaccatcgca |
45408170 |
T |
|
| Q |
119 |
ataaagctcaacacgaccatcatcatctcggcggagacgggctgccattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagca |
218 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45408169 |
ataaagctcaatgcgaccatcttcatctcggcggagacgggctgccattggatagaacaggaccagcaccttgcttagagcttccttcataatcttagca |
45408070 |
T |
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| Q |
219 |
tcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagttccataacgcctttc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45408069 |
tcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggaattccataacgcctttc |
45407970 |
T |
|
| Q |
319 |
gtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctctgct |
380 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
45407969 |
gtggtgtctcctccgccggacgcaccaccatcgactctttcacgttgatcaacatctctgct |
45407908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 307
Target Start/End: Complemental strand, 1127787 - 1127564
Alignment:
| Q |
84 |
tcagcatcgacgaagagcaccccctgaccatcgcaataaagctcaacacgaccatcatcatctcggcggagacgggctgccattggatagaacgggacca |
183 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| |||| || ||||||||||||||| ||||| || || ||||| | ||||||||||| |||||||| | |
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| T |
1127787 |
tcagcctcgacaaagagcaccccttgaccatcacaatcaatctcaacacgaccatcttcatcacgacgaagacgaccagccattggataaaacgggacaa |
1127688 |
T |
|
| Q |
184 |
gcaccttgcttagagcttccttcataatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaac |
283 |
Q |
| |
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|||||||||| |||||||| || | || ||| ||||| ||||||||||| | || || || || |||||||| || |||||||| || ||||| || || |
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| T |
1127687 |
gcaccttgctaagagcttctttaagaaccttggcatcaaagaaattggaagcaccattaggtctataaaagtaaacacttggtgtatggaaattcggtac |
1127588 |
T |
|
| Q |
284 |
caccaagtcgacgttggagttcca |
307 |
Q |
| |
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|||||| || |||||||| ||||| |
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| T |
1127587 |
caccaaatcaacgttggaattcca |
1127564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 1108167 - 1108097
Alignment:
| Q |
162 |
gccattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagcatcgaagaaattgga |
232 |
Q |
| |
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|||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
1108167 |
gccattggatagaacgggacaagcacctagctgagagcttccttcataatcttggcattgaagaaattgga |
1108097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 31967203 - 31967273
Alignment:
| Q |
162 |
gccattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagcatcgaagaaattgga |
232 |
Q |
| |
|
|||||||||||||| | ||| ||||| ||||| |||||||||||||||||||| | |||||||| ||||| |
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| T |
31967203 |
gccattggatagaatgagacaagcactttgctgagagcttccttcataatcttggtgtcgaagaatttgga |
31967273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 32016524 - 32016592
Alignment:
| Q |
164 |
cattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagcatcgaagaaattgga |
232 |
Q |
| |
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||||||||||||| ||| |||||||| | |||||||||||||||||||| || || ||||||||||| |
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| T |
32016524 |
cattggatagaacaagacaagcaccttaatgagagcttccttcataatcttggcgtccaagaaattgga |
32016592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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