View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_high_6 (Length: 379)
Name: NF14627_high_6
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 1351281 - 1351626
Alignment:
| Q |
13 |
gagatgaagtggagaaggttgtggtagagttaatagagggtgaaaagggtaaggagatgaggataaaagcaattgagtggaagaaaatggcagaagaagc |
112 |
Q |
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| T |
1351281 |
gagatgaagtggagaagctagtggtagagttaatagagggtgaaaagggtaaggagatgaggataaaagcaattgagtggaagaaaatggcagaagaagc |
1351380 |
T |
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| Q |
113 |
aaccaaccaatgttgatggttcatcctctttgaatttggaaaaattggtaagtgaagtgctgctcttcaagagttaaggcttacaagttcaatttagata |
212 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1351381 |
aac----caatgttgatggttcatcctctttgaatttggaaaaattggtaagtgaagtgctgctcttcaagagttaaggcttacaagttcaatttagata |
1351476 |
T |
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| Q |
213 |
ttgctgcaaataaaatcttcctgaagataattttgatttatttccaaatcgcgttaatgcgagattggtgctgctaactcagtggtaataacttacttag |
312 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1351477 |
ttgctgcaaataaaatcttcctgaagatgattttgatttatttccaaatcgcgttaatgcgagattggtgctgctaactcagtggtaataacttacttag |
1351576 |
T |
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| Q |
313 |
tcatgtaatcccttaaagactttgaatttctccttattcatgttgtacct |
362 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1351577 |
tcatgtaatcccttaaagacattgaatttctccttattcatgttgtacct |
1351626 |
T |
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