View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14627_high_8 (Length: 282)
Name: NF14627_high_8
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 129 - 264
Target Start/End: Complemental strand, 39830710 - 39830575
Alignment:
| Q |
129 |
cattggcgatcagaagtagacgttgaagtttcgctgtatagattgagagaattttgagcattttcgtcacacattgttaggtagggtcttctgctgccca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39830710 |
cattggcgatcagaagtagacgttgaagtttcgctgtatagattgagagaattttgagcattttcgtcacacattgttaggtagggtcttctgctgccca |
39830611 |
T |
|
| Q |
229 |
caaatttcttctaggtcatcaactactagggaatat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
39830610 |
caaatttcttctaggtcatcaactactagggaatat |
39830575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 39830829 - 39830765
Alignment:
| Q |
16 |
attatacttggtaacaaatagataatatagactcttgaagtaaacaattgtatatatttcatatt |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
39830829 |
attatacttggtaacaaatagataatatagactcttcaagtaaacaattgtatacttttcatatt |
39830765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University