View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_low_1 (Length: 878)
Name: NF14627_low_1
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 250 - 861
Target Start/End: Original strand, 5051458 - 5052079
Alignment:
| Q |
250 |
tgaaaatccaacaattctcgaatataaggatgattt-atcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggt |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataaggatgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttggt |
5051557 |
T |
|
| Q |
349 |
ttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctacttttctggttttcttctt---tc |
445 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5051558 |
ttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgctacttttctggttttcttcttctttc |
5051657 |
T |
|
| Q |
446 |
atttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagatta------agaagcgctttgcgatggatttgcatc |
539 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5051658 |
atttgttggaccaaagtatattggtgatgaagaactggccgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttgcatc |
5051757 |
T |
|
| Q |
540 |
tcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtat |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5051758 |
tcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtat |
5051857 |
T |
|
| Q |
640 |
gttcacgagctattacctaccaaattttaattggataatggattttgatacttagttgaacaattatgatagccctttgcccaactgttaaattatgtat |
739 |
Q |
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| T |
5051858 |
gttcacgagctattacctaccaaatttaaattggataattgattctgatacttagttgaacaattatgatagccctttgcccaactgtcaaattatgtat |
5051957 |
T |
|
| Q |
740 |
tattgctgacttgattgatcccggccccaatcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattcc |
839 |
Q |
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| T |
5051958 |
tgttgctgacttgattgatcccggccccgatcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattcc |
5052057 |
T |
|
| Q |
840 |
ctttacttactgccatgttcat |
861 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5052058 |
ctttacttactgccatgttcat |
5052079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 5051299 - 5051458
Alignment:
| Q |
35 |
gaacctgtgatggttgaaagatacttttttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacagtcacgtttatt |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5051299 |
gaacctgtgatggttgaaagatacttttttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacggtcacgtttatt |
5051398 |
T |
|
| Q |
135 |
tctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgt |
194 |
Q |
| |
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| T |
5051399 |
tctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgcgaggatgt |
5051458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 35 - 697
Target Start/End: Complemental strand, 51274120 - 51273452
Alignment:
| Q |
35 |
gaacctgtgatggttgaaagatacttt-tttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacagtcacgtttat |
133 |
Q |
| |
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||||||||||||||||||||||||||| |||||| || | | ||||||||| |||||||| ||||| |||||||| ||||||| ||||||||||| |
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| T |
51274120 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataa-----taaggttcacaaacaaagccttctagtacacggtcacgtttat |
51274026 |
T |
|
| Q |
134 |
ttctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctaccatgtatggttttcttgc |
233 |
Q |
| |
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| ||||||||| || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
51274025 |
tg-tgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgc |
51273927 |
T |
|
| Q |
234 |
agagaatcaagccatttgaaaatccaacaattctcgaatataag-gatg-atttatcttgttatattgctgagtttaaggtcgaattttcagcccagaaa |
331 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||| |||||| | |||||||||| ||| ||||| |
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| T |
51273926 |
agagaaacaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcgaattttcggccaagaaa |
51273827 |
T |
|
| Q |
332 |
actctaggaaatttggtttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgcta-cttttc |
430 |
Q |
| |
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|| | | |||||||| ||| ||||||||||||||| |||||| | ||| ||||| | ||| |||||| ||||||||||||||||||||||| | ||||| |
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|
| T |
51273826 |
acacaatgaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttc |
51273727 |
T |
|
| Q |
431 |
tggttttc---ttctttcatttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagat------taagaagcgct |
521 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||| |||||||||| || |||||||||| ||||||||||||||||||| |||||| |||| |
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| T |
51273726 |
tggttttcttgttctttcatttgttggagcaaagta---tggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgct |
51273630 |
T |
|
| Q |
522 |
ttgcgatggatttgcatctcactcctgtcttgtatg-gacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtata |
620 |
Q |
| |
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||| |||||||||||| |||||| |||||||||| | ||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||| ||||||| |
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| T |
51273629 |
ttgagatggatttgcaactcactgctgtcttgtacgaaacacgactccatatctctatcaataaatcatctgataaattctccatgttgattttagtata |
51273530 |
T |
|
| Q |
621 |
tattgctaatagattg-tatgttcacgagctattacctaccaaattttaattggataatggattttgatacttagttg |
697 |
Q |
| |
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|||||||| | |||| |||||||| ||||||| | ||||||||||||||||||||||| |||| |||||||| |||| |
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|
| T |
51273529 |
tattgctagaatattgttatgttcaagagctataagctaccaaattttaattggataatcgattctgatacttggttg |
51273452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 154 - 385
Target Start/End: Complemental strand, 14908035 - 14907802
Alignment:
| Q |
154 |
tggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctaccatgtatggttttcttgcagagaatcaagccatttgaa |
253 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||| | || ||||||||||||| |||| ||||||||| ||| |
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| T |
14908035 |
tggagggagtggaaatttgatcctatcttttgtgaggatgttgcagacatggtagactctactacgtgtggttttcttgcacagaaacaagccattggaa |
14907936 |
T |
|
| Q |
254 |
aatccaacaattctcgaatataag-gatgat-ttatcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggtttg |
351 |
Q |
| |
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||||||||||||||||||||||| || | || ||||||||||||| ||||||| |||||||||||| || ||||||||| || ||||||||||| |
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|
| T |
14907935 |
gatccaacaattctcgaatataagacattttattttcttgttatattgtcgagtttagggtcgaattttcggcaaagaaaactcaagtaaatttggtttt |
14907836 |
T |
|
| Q |
352 |
caggagtagaaagatggagattggatgacaacga |
385 |
Q |
| |
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||||||||||||||| |||||||| ||| ||||| |
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|
| T |
14907835 |
caggagtagaaagattgagattgggtgagaacga |
14907802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 511 - 628
Target Start/End: Complemental strand, 14907717 - 14907599
Alignment:
| Q |
511 |
taagaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttg |
609 |
Q |
| |
|
||||| |||||||| |||||||||| | |||||| ||| ||||||| | ||||| ||||| |||| ||| ||| |||||||||||| |||||||||||| |
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| T |
14907717 |
taagatgcgctttgagatggatttgtaactcactgatgttttgtatgaaacacgaatccatgtctctatcaataaatcatctgataaattctccatgttg |
14907618 |
T |
|
| Q |
610 |
attgtagtatatattgcta |
628 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
14907617 |
atttaagtatatattgcta |
14907599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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