View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_low_10 (Length: 375)
Name: NF14627_low_10
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 12285895 - 12286149
Alignment:
| Q |
1 |
taatgaaatttgctaatnnnnnnntcaatatataagaggggaaaatgatacattgatggtgggagatagcaaaagaaataataaataaagggaagattat |
100 |
Q |
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| T |
12285895 |
taatgaaatttgctaataaaaaaatcaatatataagagggaaaaatgatacattgatggtgggagataacaaaagaaataatatataaagggaagattat |
12285994 |
T |
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| Q |
101 |
ggattgcaatgaaatttagaataacaaggacgtttgtgtgtttttaatagcttaaaacccatttcattaaaatatagcacctaggtcaaattttcataat |
200 |
Q |
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| T |
12285995 |
ggagtgcaatgaaatttagaataacaaggacgtttgtgtgtttttaatagcttaaaacccatttcattaaaatatagcacctaggtcaaattttcatgat |
12286094 |
T |
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| Q |
201 |
ttgtctacaaattcagctttaatatatagtacttatgtaagggtgacactaactt |
255 |
Q |
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| T |
12286095 |
atgtctgcaaattcagctttaatatatagtacttatgtaagggtgatactaactt |
12286149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 12286151 - 12286219
Alignment:
| Q |
288 |
aatattttggacaatttaaaacacaaatacaacttcaatatttaaaccattaattaaatgcttgtttaa |
356 |
Q |
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| T |
12286151 |
aatattatggataatttaaaacacaaatacaacttcaatattaaaaccattaattaaatgtttgtttaa |
12286219 |
T |
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