View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_low_12 (Length: 321)
Name: NF14627_low_12
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 35143849 - 35144009
Alignment:
| Q |
144 |
gtaggggacaatatatttgactctactttaaattattaagaatttatttgaatttatattcctgcttgtgactcatctctaggatttgaaatttgaaatt |
243 |
Q |
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| T |
35143849 |
gtaggggacaatatatttgactctactttaaattattaagaatttatttgaatttatattcctgcttgtgactcatctctaggatttgaaatttgaaatt |
35143948 |
T |
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| Q |
244 |
tcttgttgatcgattttgtgattctactagtattaatatttgatgaaactgatgctttact |
304 |
Q |
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| T |
35143949 |
tcttgttgatcgattttgtgattctactagtattaatatttgatgaaactgatgctttact |
35144009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 35135577 - 35135736
Alignment:
| Q |
144 |
gtaggggacaatatatttgactctactttaaattattaagaatttatttgaatttatattcctgcttgtgactcatctctaggatttgaaatttgaaatt |
243 |
Q |
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| T |
35135577 |
gtaggggacaatatatt-gactctacttcaaattattaagaatttatttcaatttatattcctgcttgtgactcatctctaggatttgaaatttgaaatt |
35135675 |
T |
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| Q |
244 |
tcttgttgatcgattttgtgattctactagtattaatatttgatgaaactgatgctttact |
304 |
Q |
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| T |
35135676 |
tcttgttgattgattttgtgattctactagtattaatattcgatgaaactgatgttttact |
35135736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 35143707 - 35143802
Alignment:
| Q |
1 |
ttatttttgtttctctcctgtgcaggtaatggacacattctcactcatttaaaaattttgttttctagttcaaaggttataaggtcatcagatacg |
96 |
Q |
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| T |
35143707 |
ttatttttgtttctctcctgtgcaggtaatggacacattctcactcatttaaaaattttgttttctagttcaaaggttataaggtcatcagatacg |
35143802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 35135442 - 35135527
Alignment:
| Q |
3 |
atttttgtttctctcctgtgcaggtaatggacacattctcactcatttaaaaattttgttttctagttcaaaggttataaggtcatcag |
91 |
Q |
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| T |
35135442 |
atttttgtttttctcctgtgcaggtaatggacaaattctcactcatataaa---gttgttttatagtgcaaatgttataaggtcatcag |
35135527 |
T |
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