View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_low_14 (Length: 284)
Name: NF14627_low_14
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_low_14 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 41765633 - 41765350
Alignment:
| Q |
1 |
ttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgatc |
100 |
Q |
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| T |
41765633 |
ttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgatc |
41765534 |
T |
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| Q |
101 |
tcttagatggtgatggtccaccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactggcttgaattcctctga |
200 |
Q |
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| T |
41765533 |
tcttagatggtgatggtccgccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactggcttgaatccctctga |
41765434 |
T |
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| Q |
201 |
ggtgttggcattgcaaaacgcacgaatcgaattcttgtacaagtttggaactgcattcgagacctctggcccctgaaaatagaa |
284 |
Q |
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| T |
41765433 |
ggtgttggcattgcaaaacgcacgaatcgaattcttgtacaagtttggaactgcattcgagacctctggcccctgaaaatagaa |
41765350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 41757550 - 41757298
Alignment:
| Q |
1 |
ttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgatc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||| ||||| |
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| T |
41757550 |
ttgtgaacttgaagatcttcatctttgtgttcccaatgttcaagtagaacaggcctaacgggcccatgaaccccaccggcgaagaaagccaaaactgatc |
41757451 |
T |
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| Q |
101 |
tcttagatggtgatggtccaccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactggcttgaattcctctga |
200 |
Q |
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||||||||||||||| || |||| || | ||| ||| | |||||| ||| |||| ||||||||||||||||||| ||| | ||||||||| ||||||| |
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| T |
41757450 |
gcttagatggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcaggcttgaatccctctga |
41757351 |
T |
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| Q |
201 |
ggtgttggcattgcaaaacgcacgaatcgaattcttgtacaagtttggaactg |
253 |
Q |
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||||| |||||||||| ||| || || ||||| ||||||||||||||||||| |
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| T |
41757350 |
tgtgttcgcattgcaaagcgctcggattgaatttttgtacaagtttggaactg |
41757298 |
T |
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