View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14627_low_2 (Length: 554)

Name: NF14627_low_2
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14627_low_2
NF14627_low_2
[»] chr4 (15 HSPs)
chr4 (1-332)||(12320029-12320360)
chr4 (93-313)||(12311971-12312191)
chr4 (347-554)||(12320497-12320704)
chr4 (347-457)||(43515782-43515893)
chr4 (7-100)||(12311705-12311795)
chr4 (347-436)||(7853388-7853476)
chr4 (358-441)||(3643087-3643170)
chr4 (348-455)||(5627585-5627691)
chr4 (372-461)||(35372032-35372121)
chr4 (348-426)||(55147627-55147705)
chr4 (348-461)||(23870141-23870252)
chr4 (362-464)||(37226342-37226444)
chr4 (357-414)||(7745948-7746006)
chr4 (352-461)||(2113937-2114046)
chr4 (348-388)||(29118566-29118606)
[»] chr6 (14 HSPs)
chr6 (347-456)||(4337556-4337665)
chr6 (348-458)||(33344915-33345024)
chr6 (345-439)||(34969858-34969952)
chr6 (348-458)||(35121874-35121982)
chr6 (347-435)||(9815621-9815708)
chr6 (359-467)||(12174425-12174533)
chr6 (348-436)||(34329770-34329858)
chr6 (348-451)||(31787909-31788009)
chr6 (348-461)||(34573110-34573221)
chr6 (357-414)||(18991743-18991800)
chr6 (351-430)||(11274649-11274729)
chr6 (357-413)||(32331517-32331573)
chr6 (404-461)||(31246259-31246316)
chr6 (360-396)||(19638396-19638432)
[»] chr2 (12 HSPs)
chr2 (347-433)||(34909265-34909351)
chr2 (347-460)||(16547757-16547870)
chr2 (348-459)||(36186534-36186645)
chr2 (347-415)||(5163885-5163953)
chr2 (348-415)||(37912387-37912454)
chr2 (348-453)||(2886956-2887060)
chr2 (368-457)||(15925949-15926038)
chr2 (361-467)||(14952081-14952184)
chr2 (348-435)||(30257728-30257815)
chr2 (348-396)||(4206326-4206374)
chr2 (357-415)||(16646927-16646985)
chr2 (369-429)||(34346042-34346101)
[»] chr5 (10 HSPs)
chr5 (358-454)||(25034282-25034378)
chr5 (347-467)||(10325516-10325639)
chr5 (348-467)||(20870724-20870841)
chr5 (348-458)||(7886539-7886647)
chr5 (348-429)||(32257639-32257720)
chr5 (348-461)||(3193444-3193557)
chr5 (348-435)||(18626752-18626835)
chr5 (393-436)||(20017605-20017648)
chr5 (351-416)||(3596879-3596944)
chr5 (361-458)||(27548459-27548555)
[»] chr1 (13 HSPs)
chr1 (348-461)||(1240525-1240638)
chr1 (348-458)||(35405430-35405539)
chr1 (348-461)||(29062288-29062401)
chr1 (348-415)||(22667163-22667230)
chr1 (348-459)||(49762375-49762485)
chr1 (348-435)||(15102999-15103082)
chr1 (348-425)||(23897857-23897937)
chr1 (348-460)||(1153648-1153760)
chr1 (348-434)||(35383763-35383848)
chr1 (388-433)||(33735695-33735740)
chr1 (351-430)||(35204171-35204251)
chr1 (372-435)||(8246665-8246726)
chr1 (350-414)||(36382974-36383038)
[»] chr8 (8 HSPs)
chr8 (348-456)||(13580286-13580393)
chr8 (356-467)||(4350581-4350691)
chr8 (348-451)||(13236276-13236379)
chr8 (348-426)||(43872601-43872679)
chr8 (357-395)||(24606874-24606912)
chr8 (351-461)||(34142149-34142257)
chr8 (351-430)||(12181916-12181997)
chr8 (351-430)||(12426344-12426425)
[»] chr7 (12 HSPs)
chr7 (357-460)||(12177910-12178010)
chr7 (348-458)||(3351174-3351283)
chr7 (347-429)||(22318618-22318700)
chr7 (348-413)||(35812709-35812774)
chr7 (357-436)||(26914291-26914369)
chr7 (348-414)||(15133276-15133342)
chr7 (347-436)||(42335892-42335981)
chr7 (348-461)||(21828254-21828367)
chr7 (348-457)||(40351695-40351802)
chr7 (403-461)||(31799689-31799747)
chr7 (348-414)||(26448466-26448533)
chr7 (351-467)||(48393197-48393312)
[»] chr3 (10 HSPs)
chr3 (348-415)||(11365141-11365208)
chr3 (351-457)||(47000793-47000898)
chr3 (348-461)||(27538709-27538820)
chr3 (348-456)||(11383687-11383791)
chr3 (350-444)||(52704590-52704684)
chr3 (352-456)||(19149782-19149887)
chr3 (348-463)||(33290792-33290908)
chr3 (351-414)||(42417975-42418038)
chr3 (348-460)||(33510019-33510132)
chr3 (403-459)||(24252032-24252087)
[»] scaffold1173 (1 HSPs)
scaffold1173 (348-452)||(422-525)
[»] scaffold0527 (2 HSPs)
scaffold0527 (348-433)||(1739-1824)
scaffold0527 (348-433)||(9802-9887)
[»] scaffold0531 (1 HSPs)
scaffold0531 (347-429)||(9794-9878)
[»] scaffold0007 (1 HSPs)
scaffold0007 (393-437)||(4447-4491)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 12320029 - 12320360
Alignment:
Q  1 aagcgaagaaaatgagatcgtgattgttggaggtggtatatgtggccttgcaacagccctagcacttcataggttttattattatgcaagccaaatttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320029 aagcgaagaaaatgagatcgtgattgttggaggtggtatatgtggccttgcaacagccctagcacttcataggttttattattatgcaagccaaatttat 12320128  T
Q  101 ttatatataaaactttgatatgatcttataagataagattacattttcactaactttgcaggaagagaataaagagtttggtgttagaaagatcagagga 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320129 ttatatataaaactttgatatgatattataagataagattacattttcactaactttgcaggaagagaataaagagtttggtgttagaaagatcagagga 12320228  T
Q  201 gttgagagctacaggtgcagctataattgttcaagctaatggatggcatgcacttgatcagcttggtgttggttcaatacttagagaaactgctattcaa 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320229 gttgagagctacaggtgcagctataattgtgcaagctaatggatggcatgcacttgatcagcttggtgttggttcaatacttagagaaactgctattcaa 12320328  T
Q  301 atacaagggtaatcatgattaatcatattgag 332  Q
    ||||||||||||||||||||||| ||||||||    
T  12320329 atacaagggtaatcatgattaattatattgag 12320360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 93 - 313
Target Start/End: Original strand, 12311971 - 12312191
Alignment:
Q  93 aaatttatttatatataaaactttgatatgatcttataagataagattacattttcactaactttgcaggaagagaataaagagtttggtgttagaaaga 192  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |    
T  12311971 aaatttatttatatataaaactttgatatgatcttatgagataagattatattttcattaactttgcaggaagagtataaagagtttggtgttagaaaaa 12312070  T
Q  193 tcagaggagttgagagctacaggtgcagctataattgttcaagctaatggatggcatgcacttgatcagcttggtgttggttcaatacttagagaaactg 292  Q
    |||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12312071 tcagaggaattgcgagccacaggggcagctataattgttcaagctaatggatggcatgcacttgatcagcttggtgttggttcaatacttagagaaactg 12312170  T
Q  293 ctattcaaatacaagggtaat 313  Q
    ||||||||||||| |||||||    
T  12312171 ctattcaaatacatgggtaat 12312191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 347 - 554
Target Start/End: Original strand, 12320497 - 12320704
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacact 446  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  12320497 aaacttcgattataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttttgttcaggacacc 12320596  T
Q  447 aaaaatcttaggaccaaccctacctaacacatgaaatttttctcataaaaatgcacttattcttcaccattaataacatcattatcttatatatagggga 546  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  12320597 aaaaatcttcggaccaaccctacctaacacatgacatttttctcataaaaatgcacttattcttcaccatcaataacatcattatcttatatttagggga 12320696  T
Q  547 aaattcat 554  Q
    ||||||||    
T  12320697 aaattcat 12320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 347 - 457
Target Start/End: Complemental strand, 43515893 - 43515782
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaa-tgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacac 445  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||| |||||||||||||||||||  ||||||||    
T  43515893 aaactttgattataaatgaatcttttgcaacaaaaaaatgtaagaagaaaactattagaataactaaaagggcacaattttattgtttcgcccaggacac 43515794  T
Q  446 taaaaatcttag 457  Q
     |||||||||||    
T  43515793 caaaaatcttag 43515782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 12311705 - 12311795
Alignment:
Q  7 agaaaatgagatcgtgattgttggaggtggtatatgtggccttgcaacagccctagcacttcataggttttattattatgcaagccaaatttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   ||||||| |||||||||    
T  12311705 agaaaatgagatcgtgattgttggaggtggtatatgtggccttgcaacagccctagcgcttcataggttctatt---atgcaagtcaaatttat 12311795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 347 - 436
Target Start/End: Original strand, 7853388 - 7853476
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 436  Q
    ||||||||| |||||||||||  ||||||| |||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  7853388 aaactttgattataaatgaattctttgcaataaaa-atgtaagaagaaaactattgaaataattaaaagggtacaattttattgtttcgt 7853476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 358 - 441
Target Start/End: Complemental strand, 3643170 - 3643087
Alignment:
Q  358 ataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcagg 441  Q
    |||||||||| || |||||||||||||  |||||||||| |||||||||||||||||   |||||||||||||||||| |||||    
T  3643170 ataaatgaattttgtgcaacaaaaaatccaagaagaaaaatattggaataattaaaatgacacaattttattgtttcgctcagg 3643087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 348 - 455
Target Start/End: Original strand, 5627585 - 5627691
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||| ||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||| |||  | ||||||||||||| |||| ||  |    
T  5627585 aactctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaatatttgaataattaaaagggcatga-tttattgtttcgtccagggcatca 5627683  T
Q  448 aaaatctt 455  Q
    ||||||||    
T  5627684 aaaatctt 5627691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 461
Target Start/End: Complemental strand, 35372121 - 35372032
Alignment:
Q  372 tgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggacc 461  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||  |||||| |||||||||| || |||| ||| |||||| ||| ||||    
T  35372121 tgcaacaaaaaatgtaagaagaaaaatattagaatatttaaaatggcacaactttattgttttgtccagggcaccaaaaattttatgacc 35372032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 55147705 - 55147627
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaatttt 426  Q
    |||||||| ||||||||||| || | |||||||||||  || | ||||| |||| ||||||||||||||||||||||||    
T  55147705 aactttgattataaatgaatcttgtacaacaaaaaatagaatatgaaaaatattagaataattaaaagagcacaatttt 55147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 23870141 - 23870252
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||||||||||||||||||||||||||| | ||||| ||||  |||| |||||||||||  |  ||| ||||||||||||  || | ||| |    
T  23870141 aactttgattataaatgaatattttgcaacaaaaaaagcaagaa-aaaaaaattgtaataattaaaaaggttcaa-tttattgtttcggccaaggcacca 23870238  T
Q  448 aaaatcttaggacc 461  Q
    ||||||||||||||    
T  23870239 aaaatcttaggacc 23870252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 464
Target Start/End: Original strand, 37226342 - 37226444
Alignment:
Q  362 atgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggacc 461  Q
    |||||| ||||||||||||||||| || || |||   |||  ||||||||||||| ||| ||||||||| ||||| || ||||| ||| |||||| ||||    
T  37226342 atgaatcttttgcaacaaaaaatgaaataaaaaagacattcaaataattaaaagaacacgattttattgattcgtccaagacaccaaagatcttaagacc 37226441  T
Q  462 aac 464  Q
    |||    
T  37226442 aac 37226444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 7746006 - 7745948
Alignment:
Q  357 tataaatgaat-attttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 414  Q
    ||||||||||| ||||| |||||||||||| |||||||||  |||| ||||||||||||    
T  7746006 tataaatgaattattttccaacaaaaaatgcaagaagaaagatatttgaataattaaaa 7745948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 461
Target Start/End: Original strand, 2113937 - 2114046
Alignment:
Q  352 ttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaa 451  Q
    |||| ||| ||| ||| |||||||| |||||||  |||||||||   |||  ||||||||||||  || | |||||||| |||| | ||| |||||||||    
T  2113937 ttgattatgaattaatcttttgcaataaaaaatacaagaagaaagacattcaaataattaaaaggacatagttttattgattcgcttagggcactaaaaa 2114036  T
Q  452 tcttaggacc 461  Q
    ||||||||||    
T  2114037 tcttaggacc 2114046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 29118566 - 29118606
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaa 388  Q
    |||||||| ||| |||||||||||||||| |||||||||||    
T  29118566 aactttgattatgaatgaatattttgcaataaaaaatgtaa 29118606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 347 - 456
Target Start/End: Complemental strand, 4337665 - 4337556
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacact 446  Q
    ||||||||| ||||||| ||| |||| |||||||||||||||||||||| ||||| ||||||||||||  ||||||||||||| ||| |||||||||||     
T  4337665 aaactttgattataaataaatcttttacaacaaaaaatgtaagaagaaagctattagaataattaaaatggcacaattttattattttgttcaggacacc 4337566  T
Q  447 aaaaatctta 456  Q
    ||||||||||    
T  4337565 aaaaatctta 4337556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 348 - 458
Target Start/End: Original strand, 33344915 - 33345024
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||| |||| ||||||||||||| ||| || ||||||||||||| |||| ||| |    
T  33344915 aactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataattaaaagggcataa-tttattgtttcgtccagggcacca 33345013  T
Q  448 aaaatcttagg 458  Q
    |||||||||||    
T  33345014 aaaatcttagg 33345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 439
Target Start/End: Original strand, 34969858 - 34969952
Alignment:
Q  345 agaaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttca 439  Q
    ||||||||||| ||||||||||| |||| |||||||||||| |||||||||| |||||||||| | ||||| |||| ||||| ||||||||||||    
T  34969858 agaaactttgactataaatgaatcttttacaacaaaaaatgcaagaagaaaaatattggaatagtgaaaagggcactattttgttgtttcgttca 34969952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 458
Target Start/End: Complemental strand, 35121982 - 35121874
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| |||||||||||||||||||||| ||||||  ||||||||| |||| ||||||||||||| ||| || ||||||||||||| |||| ||| |    
T  35121982 aactttgattataaatgaatattttgcaaca-aaaatgctagaagaaaaatatttgaataattaaaagggcataa-tttattgtttcgtccagggcacca 35121885  T
Q  448 aaaatcttagg 458  Q
    |||||||||||    
T  35121884 aaaatcttagg 35121874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 9815708 - 9815621
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 435  Q
    ||||| ||| ||||||||| | ||||| ||||||||||| |||||||| | |||| ||||||||||||| |||||||||||||||||||    
T  9815708 aaactatgattataaatgagt-ttttgtaacaaaaaatgcaagaagaataatattagaataattaaaagggcacaattttattgtttcg 9815621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 12174425 - 12174533
Alignment:
Q  359 taaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttagg 458  Q
    ||||||||| ||||| |||||||| || |||||| ||| ||||| ||||| ||||| | ||||||||||||||||||| || ||||| |||||||| ||     
T  12174425 taaatgaatcttttgtaacaaaaactgcaagaaggaaaatattgaaataaataaaacaacacaattttattgtttcgtccatgacaccaaaaatctcaga 12174524  T
Q  459 accaaccct 467  Q
    |||| ||||    
T  12174525 accagccct 12174533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 436
Target Start/End: Complemental strand, 34329858 - 34329770
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 436  Q
    |||||||  |||||||  || ||||||||||||||||| |||||||||| |||| ||||||||||||| |||  |||||||||||||||    
T  34329858 aactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataattaaaagggcatgattttattgtttcgt 34329770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 451
Target Start/End: Original strand, 31787909 - 31788009
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||| | ||||||||||||||||||||| ||||||| ||||  |||| ||||| |||||||||||  | |||| ||||||||||||| |||||||| |    
T  31787909 aactttaattataaatgaatattttgcaactaaaaatgcaaga--aaaaatattgaaataattaaaaaggtacaa-tttattgtttcgtccaggacacca 31788005  T
Q  448 aaaa 451  Q
    ||||    
T  31788006 aaaa 31788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 461
Target Start/End: Complemental strand, 34573221 - 34573110
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||||||||||| ||||  || ||| |||| || ||||||| |||| ||||| || |||| ||||||||||||||||| ||  ||||||  |    
T  34573221 aactttgattataaatgaatctttt--aaaaaagaatgcaaaaagaaaaatatttgaatattttaaagggcacaattttattgttttgtctaggacatca 34573124  T
Q  448 aaaatcttaggacc 461  Q
    ||||||||| ||||    
T  34573123 aaaatcttaagacc 34573110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 18991800 - 18991743
Alignment:
Q  357 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 414  Q
    ||||||||||| || |||||||||||||| |||||||||| ||||| |||| ||||||    
T  18991800 tataaatgaatcttgtgcaacaaaaaatgcaagaagaaaaatattgaaatagttaaaa 18991743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 11274649 - 11274729
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataatt-aaaagagcacaattttattg 430  Q
    ||||| ||| |||||||||||||||||||||| |  ||||| ||||  ||||||||| || |||||| |||||||||||||    
T  11274649 tttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaacattggaatagttaaaaagaacacaattttattg 11274729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 32331573 - 32331517
Alignment:
Q  357 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaa 413  Q
    ||||||| ||| |||||||||||||||| ||||||||||| |||| || ||||||||    
T  32331573 tataaataaatcttttgcaacaaaaaatataagaagaaaagtatttgactaattaaa 32331517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 461
Target Start/End: Complemental strand, 31246316 - 31246259
Alignment:
Q  404 aataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggacc 461  Q
    |||||||||||   ||||||||||||  |||||||||| |||| ||||||||||||||    
T  31246316 aataattaaaatgacacaattttattaattcgttcagggcacttaaaatcttaggacc 31246259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 19638432 - 19638396
Alignment:
Q  360 aaatgaatattttgcaacaaaaaatgtaagaagaaaa 396  Q
    |||||||| |||| |||||||||||||||||||||||    
T  19638432 aaatgaatcttttacaacaaaaaatgtaagaagaaaa 19638396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 347 - 433
Target Start/End: Complemental strand, 34909351 - 34909265
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 433  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  || |||||||||||||    
T  34909351 aaactttgactataaatgaatattttgcaacaaaaaatgtaagaagaaaattattgaaataattaaaaggacaaaattttattgttt 34909265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 347 - 460
Target Start/End: Original strand, 16547757 - 16547870
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacact 446  Q
    ||||||||| |||||||| || |||| ||||||||||||||||||||||||||||| ||  ||||||||  ||||||||||||||||||| |||  |||     
T  16547757 aaactttgattataaatggatcttttacaacaaaaaatgtaagaagaaaactattgaaactattaaaaggacacaattttattgtttcgtccagagcaca 16547856  T
Q  447 aaaaatcttaggac 460  Q
    ||||||||||||||    
T  16547857 aaaaatcttaggac 16547870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 459
Target Start/End: Complemental strand, 36186645 - 36186534
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||||||| ||| ||||||||||||||||||| ||||||||  ||| |||||||||||||  || |||||||  |||||||| ||| ||| |    
T  36186645 aactttgattataaataaatcttttgcaacaaaaaatgtatgaagaaaaacattagaataattaaaaggacaaaattttaccgtttcgtttagggcacca 36186546  T
Q  448 aaaatcttagga 459  Q
    ||||||||||||    
T  36186545 aaaatcttagga 36186534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 5163885 - 5163953
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 415  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |||||    
T  5163885 aaactttgattataaatgaatcttttgtaacaaaaaatgtaagaagaaaactattgaaataataaaaag 5163953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 37912387 - 37912454
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 415  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||||    
T  37912387 aactttgattataaatgaatattttgcaacaaacaatgtaaggagaaaaatatttgaataattaaaag 37912454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 453
Target Start/End: Complemental strand, 2887060 - 2886956
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||||||| |||  | | |||||||||||| |||||||||| |||| ||||||||||||  | ||||||||||||||| ||| ||| |||||    
T  2887060 aactttgattataaataaatcatctacaacaaaaaatgcaagaagaaaagtattagaataattaaaaaggtacaattttattgttttgttaagg-cacta 2886962  T
Q  448 aaaatc 453  Q
    ||||||    
T  2886961 aaaatc 2886956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 15925949 - 15926038
Alignment:
Q  368 attttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttag 457  Q
    ||||||||||||||||||||||||||||| ||||  |||||||| ||  | |||||||||||| |||  ||| ||||| |||||||||||    
T  15925949 attttgcaacaaaaaatgtaagaagaaaaatatttaaataattataaaggtacaattttattgattcactcatgacacaaaaaatcttag 15926038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 467
Target Start/End: Original strand, 14952081 - 14952184
Alignment:
Q  361 aatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggac 460  Q
    |||||||||||||||||||||| ||||| ||||||  |||| ||||||||||||  ||||   ||||||  |||||||| ||||  |||||||||||| |    
T  14952081 aatgaatattttgcaacaaaaattgtaaaaagaaagatattcgaataattaaaaatgcac---tttattaattcgttcaagacatcaaaaatcttagggc 14952177  T
Q  461 caaccct 467  Q
    | |||||    
T  14952178 cgaccct 14952184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 435
Target Start/End: Complemental strand, 30257815 - 30257728
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 435  Q
    |||||||| ||||||| ||| ||||| ||||||||||| ||||  |||| ||||  |||| ||||||| ||||||| |||||||||||    
T  30257815 aactttgattataaataaatcttttgaaacaaaaaatgcaagataaaaaatattaaaatatttaaaagggcacaatcttattgtttcg 30257728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 4206374 - 4206326
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaa 396  Q
    |||||| | ||||||||||||||||||||||||||||| ||||| ||||    
T  4206374 aactttaattataaatgaatattttgcaacaaaaaatgcaagaaaaaaa 4206326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 16646985 - 16646927
Alignment:
Q  357 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 415  Q
    ||||||||||| || |||||||||||||  |||||||||| ||||  ||||||||||||    
T  16646985 tataaatgaatcttgtgcaacaaaaaataaaagaagaaaaatattaaaataattaaaag 16646927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 34346042 - 34346101
Alignment:
Q  369 ttttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 429  Q
    ||||||||||||||||  |||||||||| |||| ||||| |||||| | ||||||||||||    
T  34346042 ttttgcaacaaaaaatacaagaagaaaaatattagaatatttaaaa-atcacaattttatt 34346101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 358 - 454
Target Start/End: Complemental strand, 25034378 - 25034282
Alignment:
Q  358 ataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatct 454  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | |||||||||   || |||||||||||||||| |||||||| ||||||||    
T  25034378 ataaatgaattttttgcaacaaaaaatgtaagaagaaaactattgaagtaattaaaatgacataattttattgtttcgtccaggacaccaaaaatct 25034282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 347 - 467
Target Start/End: Complemental strand, 10325639 - 10325516
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaat---gtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggac 443  Q
    |||||||||  |||||||||| |||||||||||||||    ||| ||  |||||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  10325639 aaactttgatcataaatgaatcttttgcaacaaaaaaaaaagtaggattaaaactatcggaataattaaaagggcacaattttattgtttcgtccaggac 10325540  T
Q  444 actaaaaatcttaggaccaaccct 467  Q
    || ||| ||||||| ||| |||||    
T  10325539 accaaatatcttagaaccgaccct 10325516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 348 - 467
Target Start/End: Original strand, 20870724 - 20870841
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| |||||||||||||| |||||||||||||| ||||| |||| ||||  |||||||||||  | |||| ||||||||||||| |||| |||||    
T  20870724 aactttgattataaatgaatattctgcaacaaaaaatgcaagaa-aaaaatattaaaataattaaaatggtacaa-tttattgtttcgtccagggcacta 20870821  T
Q  448 aaaatcttaggaccaaccct 467  Q
    |||||  ||||||| |||||    
T  20870822 aaaattctaggaccgaccct 20870841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 458
Target Start/End: Complemental strand, 7886647 - 7886539
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||||| ||||||||||| ||||||||| |||||||||||| | || ||||||||||||  |||||| ||||||||||||  | |||||| |    
T  7886647 aactttgattataagtgaatattttggaacaaaaaa-gtaagaagaaaaatgtttgaataattaaaatggcacaa-tttattgtttcgcccgggacacca 7886550  T
Q  448 aaaatcttagg 458  Q
    |||||||||||    
T  7886549 aaaatcttagg 7886539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 32257720 - 32257639
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 429  Q
    |||||||| ||||||||||| || || ||||||||||| ||||| ||||  ||||||||||||||||| ||||| |||||||    
T  32257720 aactttgattataaatgaattttgtgtaacaaaaaatgcaagaacaaaaaaattggaataattaaaagggcacagttttatt 32257639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 461
Target Start/End: Complemental strand, 3193557 - 3193444
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||| ||||||| |||||||| |||||||| |||||||||   |||  ||||||||||||  || |||||||||  ||||  |||| | |||    
T  3193557 aactttgattatgaatgaatcttttgcaataaaaaatgcaagaagaaagacattcaaataattaaaaggacataattttattaattcgcccagggcgcta 3193458  T
Q  448 aaaatcttaggacc 461  Q
    ||||||||||||||    
T  3193457 aaaatcttaggacc 3193444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 18626752 - 18626835
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 435  Q
    |||||||| ||||||||||| || |||||||||||||   | ||||||| ||||  ||||||||||||  ||||||||||||||||||    
T  18626752 aactttgattataaatgaatcttgtgcaacaaaaaat---acaagaaaa-tattaaaataattaaaaggacacaattttattgtttcg 18626835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 20017605 - 20017648
Alignment:
Q  393 aaaactattggaataattaaaagagcacaattttattgtttcgt 436  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||    
T  20017605 aaaaatattagaataattaaaagggcacaattttattgtttcgt 20017648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 3596944 - 3596879
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaaga 416  Q
    ||||||||||| ||||| ||||| || ||||||| ||| || |||| |||| ||||||||||||||    
T  3596944 tttgaatataagtgaatcttttgaaaaaaaaaatataaaaataaaagtattagaataattaaaaga 3596879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 458
Target Start/End: Complemental strand, 27548555 - 27548459
Alignment:
Q  361 aatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttagg 458  Q
    ||||||| ||| |||  ||||||| ||||||||||   ||| ||||||||||||| |||||| ||||||| ||||| |||||||  |||| |||||||    
T  27548555 aatgaatttttcgcactaaaaaatataagaagaaagacatttgaataattaaaag-gcacaactttattgattcgtacaggacatcaaaagtcttagg 27548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 1240525 - 1240638
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||| |||  | ||||||||||| |||||||||||||||||||| || | ||| |    
T  1240525 aacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatcaggataattaaaagggcacaattttattgtttcgtccaaggcacca 1240624  T
Q  448 aaaatcttaggacc 461  Q
    | ||||||||||||    
T  1240625 agaatcttaggacc 1240638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 348 - 458
Target Start/End: Original strand, 35405430 - 35405539
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| || |||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| || |||  ||||||||||| ||||  ||  |    
T  35405430 aactttgattagaaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaagggcgcaa-attattgtttcgctcagtgcaaca 35405528  T
Q  448 aaaatcttagg 458  Q
    |||||||||||    
T  35405529 aaaatcttagg 35405539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 461
Target Start/End: Complemental strand, 29062401 - 29062288
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||| | ||||||| ||| ||||||||||||||||  |||||||||  ||||||| ||||||||||||||  |||||||||||||||| |  |||| |    
T  29062401 aacttttattataaataaatcttttgcaacaaaaaatacaagaagaaatatattggagtaattaaaagagcattattttattgtttcgtttaaaacacca 29062302  T
Q  448 aaaatcttaggacc 461  Q
    ||||||||| ||||    
T  29062301 aaaatcttaagacc 29062288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 22667230 - 22667163
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 415  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||    
T  22667230 aactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaag 22667163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 348 - 459
Target Start/End: Complemental strand, 49762485 - 49762375
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||||||||| | || || |||||||||| ||||||||||| |||| ||||||||||||   ||||||||||||||||||| || | ||  |    
T  49762485 aactttgattataaatgagttttgtgtaacaaaaaatataagaagaaaa-tattagaataattaaaaagacacaattttattgtttcgtccaaggcatca 49762387  T
Q  448 aaaatcttagga 459  Q
    ||||||||||||    
T  49762386 aaaatcttagga 49762375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 435
Target Start/End: Complemental strand, 15103082 - 15102999
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 435  Q
    |||||||| ||||||||||| || |||||||||||||   | ||||||| ||||| ||||||||||||| ||||||||||||||||||    
T  15103082 aactttgattataaatgaatcttgtgcaacaaaaaat---acaagaaaa-tattgaaataattaaaagaacacaattttattgtttcg 15102999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 23897937 - 23897857
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaa--aaaatgtaagaagaaaactattggaat-aattaaaagagcacaattt 425  Q
    |||||||| |||||||||||||||||||||||  |||||| |||||||||| |||| |||| ||||||||| |||||||||    
T  23897937 aactttgattataaatgaatattttgcaacaaaaaaaatgcaagaagaaaaatatttgaataaattaaaagggcacaattt 23897857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 460
Target Start/End: Complemental strand, 1153760 - 1153648
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| | | ||| ||| ||||||||||||||| | |||||||||  |||| | ||||||||||  | |||| ||||||| ||||  |||||||| |    
T  1153760 aactttgattttcaattaatcttttgcaacaaaaaacgcaagaagaaagatattcggataattaaaacggtacaactttattgattcgcacaggacacca 1153661  T
Q  448 aaaatcttaggac 460  Q
    |||||||||||||    
T  1153660 aaaatcttaggac 1153648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 35383848 - 35383763
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttc 434  Q
    |||||||| ||||||||||  |||||||||||||| |||||| |||||  |||| ||||||||||||   |||||||| ||||||||    
T  35383848 aactttgattataaatgaaacttttgcaacaaaaa-tgtaagtagaaatatattagaataattaaaatgacacaatttgattgtttc 35383763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 33735740 - 33735695
Alignment:
Q  388 agaagaaaactattggaataattaaaagagcacaattttattgttt 433  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||    
T  33735740 agaagaaaactattaaaataattaaaagggcacaattttattgttt 33735695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 35204251 - 35204171
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataatt-aaaagagcacaattttattg 430  Q
    ||||| ||| |||||||||||||||| ||||| |  ||||| ||||  |||||||||||| |||||| |||||||||||||    
T  35204251 tttgattatgaatgaatattttgcaataaaaagtacaagaaaaaaaacattggaataattaaaaagaacacaattttattg 35204171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 435
Target Start/End: Complemental strand, 8246726 - 8246665
Alignment:
Q  372 tgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 435  Q
    ||||||||||||| |||||| |||  ||||||| |||||| |||| |||||||||||| |||||    
T  8246726 tgcaacaaaaaatataagaaaaaa--tattggagtaattagaagaacacaattttattatttcg 8246665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 36382974 - 36383038
Alignment:
Q  350 ctttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 414  Q
    |||||| ||| |||||||||||  |||||||||||||| ||||||||  |||  |||||||||||    
T  36382974 ctttgattatgaatgaatatttcacaacaaaaaatgtatgaagaaaaacattcaaataattaaaa 36383038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 13580393 - 13580286
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||  ||||||||||||||||||||||||||||| ||||  |||| |||| |||||||||||||| || || ||||||||||||| |||||||| |    
T  13580393 aactttggttataaatgaatattttgcaacaaaaaatgcaagacaaaaaatattagaataattaaaagaacataa-tttattgtttcgtccaggacacca 13580295  T
Q  448 aaaatctta 456  Q
    |||||||||    
T  13580294 aaaatctta 13580286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 467
Target Start/End: Complemental strand, 4350691 - 4350581
Alignment:
Q  356 atataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatctt 455  Q
    ||||||| ||||||||| |||||||||||| ||||| |||| ||||  |||||||||||| | |||| ||||||||||||| |||||||| ||||||| |    
T  4350691 atataaacgaatatttttcaacaaaaaatgcaagaaaaaaaatattaaaataattaaaagggtacaa-tttattgtttcgtccaggacacgaaaaatcct 4350593  T
Q  456 aggaccaaccct 467  Q
    ||||||| ||||    
T  4350592 aggaccagccct 4350581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 451
Target Start/End: Original strand, 13236276 - 13236379
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| |||||| |||| |||||||||||| |||| |||||||||| |||||||||||||||||  ||| |||||||||||||| | |||| ||| |    
T  13236276 aactttgattataaacgaattttttgcaacaaataatgcaagaagaaaaatattggaataattaaaatggcataattttattgtttcatccagggcacca 13236375  T
Q  448 aaaa 451  Q
    ||||    
T  13236376 aaaa 13236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 43872601 - 43872679
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaatttt 426  Q
    |||||||| ||||||||||| || |||||||||||||  || ||||||| |||| ||||||||||||| | ||||||||    
T  43872601 aactttgattataaatgaatcttgtgcaacaaaaaatacaaaaagaaaaatattagaataattaaaagggtacaatttt 43872679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 24606874 - 24606912
Alignment:
Q  357 tataaatgaatattttgcaacaaaaaatgtaagaagaaa 395  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  24606874 tataaatgaatcttttgcagcaaaaaatgtaagaagaaa 24606912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 461
Target Start/End: Original strand, 34142149 - 34142257
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaa 450  Q
    ||||| |||||||||||||||  |||||||||||| | ||| ||||  |||  |||||||||||| | |||| ||||||||||||| |||  ||  ||||    
T  34142149 tttgattataaatgaatatttatcaacaaaaaatgcacgaa-aaaaaaattaaaataattaaaagggtacaa-tttattgtttcgtccagagcatcaaaa 34142246  T
Q  451 atcttaggacc 461  Q
    |||||||||||    
T  34142247 atcttaggacc 34142257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 12181916 - 12181997
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaag-aagaaaactattggaataatta-aaagagcacaattttattg 430  Q
    ||||| ||| |||||||||||||||||||||| |  ||| || ||||  ||||||||||||| ||||| |||||||||||||    
T  12181916 tttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaaacattggaataattataaagaacacaattttattg 12181997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 12426344 - 12426425
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaag-aagaaaactattggaataatta-aaagagcacaattttattg 430  Q
    ||||| ||| |||||||||||||||||||||| |  ||| || ||||  ||||||||||||| ||||| |||||||||||||    
T  12426344 tttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaaacattggaataattataaagaacacaattttattg 12426425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 357 - 460
Target Start/End: Original strand, 12177910 - 12178010
Alignment:
Q  357 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatctta 456  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||   |||||| |||| ||| |||| |||||    
T  12177910 tatagatgaatcttttgcaacaaaaaatgtaagaagaaaactattagaataattaatagggcacaatttta---tttcgtccagggcaccaaaactctta 12178006  T
Q  457 ggac 460  Q
    ||||    
T  12178007 ggac 12178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 348 - 458
Target Start/End: Original strand, 3351174 - 3351283
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| |||||||||||||||| |||||||||||| |||||||||| ||||  ||||||||||||   |||| |||||||||| |||||||  || |    
T  3351174 aactttgattataaatgaatattttacaacaaaaaatgcaagaagaaaaatattttaataattaaaaggaaacaa-tttattgttttgttcagggtacca 3351272  T
Q  448 aaaatcttagg 458  Q
    |||||||||||    
T  3351273 aaaatcttagg 3351283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 347 - 429
Target Start/End: Complemental strand, 22318700 - 22318618
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 429  Q
    ||||||| | ||||||| ||| ||||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||    
T  22318700 aaactttaattataaataaatcttttgcaacaaaaaatgtaagaaaaaaactattgaaataactaaaagggcacaattttatt 22318618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 35812709 - 35812774
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaa 413  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  35812709 aactttgattataaatgaatattttgcaacaaaaaatgcaagaagaataatattggaataattaaa 35812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 357 - 436
Target Start/End: Complemental strand, 26914369 - 26914291
Alignment:
Q  357 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 436  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||  ||| |||||||||||||||    
T  26914369 tataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaaaggacac-attttattgtttcgt 26914291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 15133342 - 15133276
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 414  Q
    |||||||| |||||||||||||||| |||||||||||||||||| |||| |||| ||||||||||||    
T  15133342 aactttgattataaatgaatattttacaacaaaaaatgtaagaaaaaaaatatttgaataattaaaa 15133276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 347 - 436
Target Start/End: Complemental strand, 42335981 - 42335892
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 436  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||  ||| |||||||   || ||||||||| ||||||    
T  42335981 aaactttgattataaatgaatcttttgcaacaaaaaatgtaagaaaaaaactattaaaatgattaaaaagacataattttattatttcgt 42335892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 21828254 - 21828367
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg-ttcaggacact 446  Q
    |||||||| ||||||||||| || |||||||||||||  |||| ||||| |||| ||||||||||||| | |||||||| || |||||  ||||| |||     
T  21828254 aactttgattataaatgaatcttgtgcaacaaaaaataaaagacgaaaaatattagaataattaaaagggtacaatttttttctttcgcctcagg-cacc 21828352  T
Q  447 aaaaatcttaggacc 461  Q
    |||||||||||||||    
T  21828353 aaaaatcttaggacc 21828367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 457
Target Start/End: Complemental strand, 40351802 - 40351695
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||||||| ||| |||  |||||||||||| ||||| ||||  ||| ||||||||||||| | | |||||||||||||||| || ||||| |    
T  40351802 aactttgattataaataaatctttatcaacaaaaaatgcaagaaaaaaa--attagaataattaaaagggaagaattttattgtttcgtccaagacacca 40351705  T
Q  448 aaaatcttag 457  Q
    ||||||||||    
T  40351704 aaaatcttag 40351695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 403 - 461
Target Start/End: Original strand, 31799689 - 31799747
Alignment:
Q  403 gaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggacc 461  Q
    |||||||||| |||||| ||||||||||||||||  ||||||| |||||||||||||||    
T  31799689 gaataattaagagagcaaaattttattgtttcgtctaggacacgaaaaatcttaggacc 31799747  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 26448466 - 26448533
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaacta-ttggaataattaaaa 414  Q
    ||||||||  |||||||||| ||||||||||||||||| ||||| |||| || ||| |||||||||||    
T  26448466 aactttgataataaatgaatcttttgcaacaaaaaatgcaagaaaaaaaatatttgaaataattaaaa 26448533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 48393312 - 48393197
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaa 450  Q
    ||||| ||||||| ||| |||  ||||||||||| ||||||||||   |||  ||||||||||||| ||||| ||||||  |||  | ||||||| ||||    
T  48393312 tttgattataaataaatctttcacaacaaaaaatataagaagaaagacatttaaataattaaaaga-cacaactttattaattctcttaggacacaaaaa 48393214  T
Q  451 atcttaggaccaaccct 467  Q
    || ||| ||||||||||    
T  48393213 atattaagaccaaccct 48393197  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 11365141 - 11365208
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 415  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  11365141 aactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaag 11365208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 457
Target Start/End: Complemental strand, 47000898 - 47000793
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaa 450  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||| ||||  ||| |||||||| |||||| ||||| |||| || || ||||| ||||    
T  47000898 tttgattataaatgaatattttgcaacaaaaaatataagaagaaaaatatttaaatgattaaaagggcacaa-tttatagttttgtccatgacaccaaaa 47000800  T
Q  451 atcttag 457  Q
    |||||||    
T  47000799 atcttag 47000793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 461
Target Start/End: Complemental strand, 27538820 - 27538709
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| || |||||||||||||||||||||||||  ||||| |||| ||||| |||| ||||||  | |||| ||||||||||| | || ||||| |    
T  27538820 aactttgattagaaatgaatattttgcaacaaaaaatacaagaa-aaaaatattgaaatagttaaaatggtacaa-tttattgtttcatccaagacacca 27538723  T
Q  448 aaaatcttaggacc 461  Q
    ||||||||||||||    
T  27538722 aaaatcttaggacc 27538709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 11383687 - 11383791
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| |||||||||||||||||||||||||||||    || |||| ||||  |||||||||||| | |||| ||||| ||||||| |||| ||| |    
T  11383687 aactttgattataaatgaatattttgcaacaaaaaatg---caataaaaatatttaaataattaaaagggtacaa-tttatagtttcgtccagggcacca 11383782  T
Q  448 aaaatctta 456  Q
    |||||||||    
T  11383783 aaaatctta 11383791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 350 - 444
Target Start/End: Complemental strand, 52704684 - 52704590
Alignment:
Q  350 ctttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggaca 444  Q
    |||||| ||||||||||| || |||||||||||||  || | ||||| |||| ||||||||||||| |||||||||| || ||||| ||| ||||    
T  52704684 ctttgattataaatgaatcttgtgcaacaaaaaatacaaaatgaaaaatattagaataattaaaagggcacaatttttttctttcgctcatgaca 52704590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 456
Target Start/End: Complemental strand, 19149887 - 19149782
Alignment:
Q  352 ttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaac-tattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaa 450  Q
    |||| ||||||| ||| |||| ||| |||||||| ||||| ||||  |||||||||||||||||| ||  |||||| ||||||||| | ||| |||||||    
T  19149887 ttgattataaataaatcttttacaataaaaaatgcaagaaaaaaaaatattggaataattaaaagggcgtaattttgttgtttcgtcctggatactaaaa 19149788  T
Q  451 atctta 456  Q
    ||||||    
T  19149787 atctta 19149782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 463
Target Start/End: Original strand, 33290792 - 33290908
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacac-t 446  Q
    ||||||||  |||||||||| || |||||||||||| | ||| |||||| ||||| |||||||||||   || || ||||||||||||| |||  |||      
T  33290792 aactttgatcataaatgaatcttgtgcaacaaaaaacgcaaggagaaaaatattgaaataattaaaaagacataactttattgtttcgtccagagcacaa 33290891  T
Q  447 aaaaatcttaggaccaa 463  Q
    |||||||||||||||||    
T  33290892 aaaaatcttaggaccaa 33290908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 42417975 - 42418038
Alignment:
Q  351 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 414  Q
    ||||| ||||||| ||||||||| |||||||||||||| || |||| ||||||||| |||||||    
T  42417975 tttgattataaataaatattttgtaacaaaaaatgtaataacaaaaatattggaatgattaaaa 42418038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 460
Target Start/End: Complemental strand, 33510132 - 33510019
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaa-actattggaataattaaaagagcacaattttattgtttcgttcaggacact 446  Q
    |||||| | ||||||||||| ||||||||||||||||  || || ||  |  |||  |||||||||||  |||||||||||||||||||  | ||||||     
T  33510132 aactttaattataaatgaatcttttgcaacaaaaaattcaaaaaaaattaaaattaaaataattaaaatggcacaattttattgtttcgccctggacacc 33510033  T
Q  447 aaaaatcttaggac 460  Q
    ||||||||||||||    
T  33510032 aaaaatcttaggac 33510019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 459
Target Start/End: Original strand, 24252032 - 24252087
Alignment:
Q  403 gaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttagga 459  Q
    ||||||||||||| |||||||||||||| ||||| |||||||| || | ||||||||    
T  24252032 gaataattaaaag-gcacaattttattgattcgtccaggacaccaatagtcttagga 24252087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 348 - 452
Target Start/End: Original strand, 422 - 525
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacacta 447  Q
    |||||||| ||||||| |||||||| ||| |||||||| |||||||||| |||| ||||||||||| | |||||| ||||| ||||||| |||||||| |    
T  422 aactttgattataaattaatattttacaataaaaaatgcaagaagaaaaatatttgaataattaaaggggcacaa-tttatagtttcgtccaggacacca 520  T
Q  448 aaaat 452  Q
    |||||    
T  521 aaaat 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 1739 - 1824
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 433  Q
    |||||||| ||||||| ||| |||||||| |||||||| |||||||||| ||||| |||||||||||   |||||||| |||||||    
T  1739 aactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaaagacacaatttaattgttt 1824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 9802 - 9887
Alignment:
Q  348 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 433  Q
    |||||||| ||||||| ||| |||||||| |||||||| |||||||||| ||||| |||||||||||   |||||||| |||||||    
T  9802 aactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaaagacacaatttaattgttt 9887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 429
Target Start/End: Original strand, 9794 - 9878
Alignment:
Q  347 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaag-aaaact-attggaataatt-aaaagagcacaattttatt 429  Q
    ||||||||| ||||||||||  |||| ||||||||||| ||| ||| |||||| |||||||||||| ||||| |||||||||||||    
T  9794 aaactttgattataaatgaag-ttttacaacaaaaaatataaaaagaaaaactaattggaataattaaaaagggcacaattttatt 9878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 4447 - 4491
Alignment:
Q  393 aaaactattggaataattaaaagagcacaattttattgtttcgtt 437  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||    
T  4447 aaaaatattgaaataattaaaaggacacaattttattgtttcgtt 4491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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