View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_low_3 (Length: 453)
Name: NF14627_low_3
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_low_3 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 8412887 - 8412467
Alignment:
| Q |
8 |
tttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaat |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412887 |
tttctcatgatgaattttagatacgaacataattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaat |
8412788 |
T |
|
| Q |
108 |
catttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttattactatt |
207 |
Q |
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| T |
8412787 |
catttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttatta----- |
8412693 |
T |
|
| Q |
208 |
tgtcattgatacttgtctcaccaaattcacaacaattttcttagttatacgaatttaatatttaa----aagtacatcgataatggtaatgcttcatata |
303 |
Q |
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| T |
8412692 |
--tcattgatacttgtctcaccaaattcacaacaattttcttaattatacgaatttaatatttaaaagtaagtacatcgataatggtagtgcttcatata |
8412595 |
T |
|
| Q |
304 |
tttagcaccatattaaataactaggtacctccattatggaggaaagaagttgagtccttacaaatgtccccgttcacttcactttttgcggtttgtatta |
403 |
Q |
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| T |
8412594 |
tttagcaccatattaaataactaggtacctccattatggaggaaagaagttgagtccttacaaatgtccccg-----ttcactttttgcggtttgtatta |
8412500 |
T |
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| Q |
404 |
tatatgttatttaataaatctcgcaatagcata |
436 |
Q |
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| T |
8412499 |
tatatgttatttaataaatctcgcaatagcata |
8412467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 8351616 - 8351253
Alignment:
| Q |
8 |
tttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaat |
107 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8351616 |
tttctcatgatgaattttagataggaacattattagaaaaagattgaagaatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaat |
8351517 |
T |
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| Q |
108 |
catttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttattactatt |
207 |
Q |
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| T |
8351516 |
catttttagcattcaaggtgcagcctaatttgtgaagccaaaagaatttctatatctgttattattattgttgcttgggccaattttagatattactagt |
8351417 |
T |
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| Q |
208 |
tgtcattgatacttgtctcaccaaattcacaacaattttcttagttatacgaatttaatatttaa----aagtacatcgataatggtaatgcttcatata |
303 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
8351416 |
tgtcattcatacttgtctcaccaaattcacaacaatttttttaattatacaaatttaatatttaaaaataagtacatcgataatggtagtgcttcatata |
8351317 |
T |
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| Q |
304 |
tttagcaccatattaaataactaggtacctccattatggaggaaagaagttgagtccttacaaa |
367 |
Q |
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| T |
8351316 |
tttaacactatattaaataactagatacctccattatggaggaaagaagttgagtccttacaaa |
8351253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 8356805 - 8356680
Alignment:
| Q |
8 |
tttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaat |
107 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||||| |
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| T |
8356805 |
tttctcatgatgaattttagatcggaacatgattagaaaaagattgaagcatttgttcttatttctacaaggaaatgatatgttacttaatcgcatgaat |
8356706 |
T |
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| Q |
108 |
catttttagcattcaaggtgcagcct |
133 |
Q |
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| T |
8356705 |
catttttagcatttatgttgcagcct |
8356680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 368
Target Start/End: Complemental strand, 8452004 - 8451859
Alignment:
| Q |
227 |
accaaattcacaacaattttcttagttatacgaatttaatatttaaaagta----catcgataatggtaatgcttcatatatttagcaccatattaaata |
322 |
Q |
| |
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||||| ||| |||||||||||| | |||| ||||||||||||||||||||| | || | |||| |||||||| |||||||||||||||| |||||| |
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| T |
8452004 |
accaatttcgcaacaattttctcaattatgcgaatttaatatttaaaagtaagtacctccacaatgataatgctttgtatatttagcaccatactaaata |
8451905 |
T |
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| Q |
323 |
actaggtacctccattatggaggaaagaagttgagtccttacaaat |
368 |
Q |
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| T |
8451904 |
acgtgataccttcattattgaggaaagaagttgagtgcgtacaaat |
8451859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 8365140 - 8365084
Alignment:
| Q |
8 |
tttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgtt |
64 |
Q |
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|||||||||| | ||||||||| || ||| ||||||| |||||||||||||||||| |
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| T |
8365140 |
tttctcatgacggattttagattggatcatgattagaagaagattgaagcatttgtt |
8365084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 9022 - 8968
Alignment:
| Q |
79 |
gaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcct |
133 |
Q |
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| T |
9022 |
gaaatgatacgttacttaatggcatgaatcatttttagcattcaaggtgcagcct |
8968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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