View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_low_5 (Length: 395)
Name: NF14627_low_5
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 5111992 - 5112272
Alignment:
| Q |
18 |
attgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaaccttagattactctatctttttcat |
117 |
Q |
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| T |
5111992 |
attgcaatacttatatcttggatataataatatgaccggcgttcttccatcaaatgtttgtcaatggcttccaaaccttagattactctatctttttcat |
5112091 |
T |
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| Q |
118 |
aatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccgg |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5112092 |
aatgatttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttgcaactatccgggaataattttgacaaaggacgtattccgg |
5112191 |
T |
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| Q |
218 |
ctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatatttgtgtcaatat |
298 |
Q |
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| T |
5112192 |
ctgatattggaaaattgatcaaacttcaagttttgtatctcgcagaaaacaacttcgagggtaagatatttgtgtcaatat |
5112272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 5095234 - 5095514
Alignment:
| Q |
18 |
attgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaaccttagattactctatctttttcat |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
5095234 |
attgcaatacttatatcttggatataataatatgaccggcattcttccatcaaatgtttgtcaagagcttccaaaccttagatcactctatcttcttcat |
5095333 |
T |
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| Q |
118 |
aatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccgg |
217 |
Q |
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|||| ||||| ||||| || ||||||||||||| |||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||| |
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| T |
5095334 |
aatgatttttatggtgcaatgccaaatgtttggcatgattgcaaagagttggaagatttagaattgtccttaaataattttgacaaaggacgtattccgg |
5095433 |
T |
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| Q |
218 |
ctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatatttgtgtcaatat |
298 |
Q |
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| T |
5095434 |
ctgacattggaaaattggccaaacttcaatttctgtatcttgcagataacaacttggagggtaagatatttttgccaatat |
5095514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 286
Target Start/End: Complemental strand, 5083083 - 5082839
Alignment:
| Q |
42 |
taataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaaccttagattactctatctttttcataatggtttttctggtgagattcca |
141 |
Q |
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||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| | ||||| | ||||||||||||| ||| |
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| T |
5083083 |
taataatctgactggcattcttccatcaaatgtttgtcaaggacttccaaaccttagattactttatctttatgttaatgatctttctggtgagatgcca |
5082984 |
T |
|
| Q |
142 |
aatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattgatcaaac |
241 |
Q |
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| T |
5082983 |
aatgtttggcattattgcaaagagttggaagaattgatactatctttcaataattttgacaaaggacatatgccagctgacattgcaaacttgccaaagc |
5082884 |
T |
|
| Q |
242 |
ttcaatttttgtatctcgcagaaaacaacttggagggtaagatat |
286 |
Q |
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|||||| ||||||||| |||||||||||||||||||||| |
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| T |
5082883 |
ttcaatctttgtatcttattagcaacaacttggagggtaagatat |
5082839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 385
Target Start/End: Original strand, 5112346 - 5112415
Alignment:
| Q |
316 |
aaatattaagtttttgcttattgttttcttaaagttaaaaatgttgccattgattttgatttttcctatg |
385 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112346 |
aaatattaagtttttatttattgtttccttaaagttaaaaatgttgccattgattttgatttttcctatg |
5112415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 14427497 - 14427228
Alignment:
| Q |
19 |
ttgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaaccttagattactctatctttttcata |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || || |||||| ||||| |||||| | |||||||||||||||||| ||||||||||| | || |
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| T |
14427497 |
ttgcaatacttatatcttggatataataatatgactggaatccttccaacaaatatttgtctagggcttccaaaccttagatcactctatctttatgcta |
14427398 |
T |
|
| Q |
119 |
atggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggc |
218 |
Q |
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||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| || || |
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| T |
14427397 |
atgatttttctggtatgatgccaaatgtttggcgtgattgcaaagagttggaagaattggaattatccaaaaataattttgacaaaggacgtatacctgc |
14427298 |
T |
|
| Q |
219 |
tgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatattt |
288 |
Q |
| |
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||| ||||||||||||| ||||||||| | | ||||||||||| |||||||||||||||||||||||||| |
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| T |
14427297 |
tgacattggaaaattgaccaaacttcagtctctgtatctcgcaaaaaacaacttggagggtaagatattt |
14427228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 285
Target Start/End: Original strand, 16874716 - 16874943
Alignment:
| Q |
58 |
attcttccatcaaatgtttgtcaatggcttccaaaccttagattactctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgatt |
157 |
Q |
| |
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||||||||||||||| |||||||| || ||||||| |||| |||||||||||||| |||||||| |||||||||| | ||||||||| |||||||| ||| |
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| T |
16874716 |
attcttccatcaaatatttgtcaagggtttccaaatcttaaattactctatctttatcataatgatttttctggtaaaattccaaatatttggcgttatt |
16874815 |
T |
|
| Q |
158 |
gcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatct |
257 |
Q |
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||||||||||||||||||| || |||||| ||||||||||| |||||||||||||| |||| |||||||| |||| ||| |||| | ||||||||| |
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| T |
16874816 |
gcaaagagttggaagatttagagctatccttcaataattttgataaaggacgtattccatctgagattggaaacttgaccaagcttcggtatttgtatct |
16874915 |
T |
|
| Q |
258 |
cgcagaaaacaacttggagggtaagata |
285 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
16874916 |
tcctagcaacaacttggagggtaagata |
16874943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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