View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_low_6 (Length: 388)
Name: NF14627_low_6
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 204 - 368
Target Start/End: Original strand, 49980737 - 49980901
Alignment:
| Q |
204 |
taagttgctcaacaattactatctttccaaagaaaatagatccatttagggactttcaaatagaccacacaatcaaatttaactaaattactagtaattt |
303 |
Q |
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| T |
49980737 |
taagttgctgaacaattactatcttttcaaagaaaatagatccatttgggaaccttcaaatagaccacacaatcaaatttaactaaattactagtaattt |
49980836 |
T |
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| Q |
304 |
cgaagaaataaaactcctgatatcaactctagaccaacaattggttccttccgtttcaaattatg |
368 |
Q |
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| T |
49980837 |
cgaagaaataaaactcctgatatcaactctagaccaacaattggttccttccgtttcaaattatg |
49980901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 49980141 - 49980266
Alignment:
| Q |
16 |
acataccaccaacaaggaaaccacgtaccaccggtcacaaggaaaccacgtaccacgtaatcaaccaaactat--gcacaaccgatccgtcctggtcaac |
113 |
Q |
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| T |
49980141 |
acataccaccaacaaggaaaccacgtaccaccg-tcacaaggaaaccacgtaccacgtaatcaaccaaactatatgcacaaccgatccgtcctggtcaac |
49980239 |
T |
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| Q |
114 |
accacaaacctctatggggtcaaatac |
140 |
Q |
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| T |
49980240 |
accacaaacctctgtggggtcaaatac |
49980266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 49980547 - 49980614
Alignment:
| Q |
138 |
tacataataacaagttttccgtgaagtcttaccttacctgaaaaccatttccacttattttttacata |
205 |
Q |
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| T |
49980547 |
tacataataacaagttttccgtgaagtcttaccttacctgaaaaccacttccacttattttttacata |
49980614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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