View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14627_low_7 (Length: 387)
Name: NF14627_low_7
Description: NF14627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14627_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 115 - 371
Target Start/End: Original strand, 7452721 - 7452977
Alignment:
| Q |
115 |
acattgccctgctgctactgctacatcaccactcactcaggtttgtcatttttaccttctgctactctaatcatctacagtgtttacaactccttttact |
214 |
Q |
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| T |
7452721 |
acattgccctgctactactgctacatcaccactcactcaggtttgtcatttttaccttctgctactctaatcatctacagtgtttacaactccttttact |
7452820 |
T |
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| Q |
215 |
agttagttattgcaatgattcttgttattgttttgacctaaaatttaatatttaccatgtttctgaatatattcttgttcttgtttctgaatctttacca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7452821 |
agttagttattgcaatgattcttgttattgttttgacctaaaatttaatatttaccatgtttatgaatatattcttgttcttgtttctgaatctttacca |
7452920 |
T |
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| Q |
315 |
tatttacaactccttttacttatagaatcacttcattcattctcatgtcttctctct |
371 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7452921 |
tatttacaactccttttatttatagaatcacttcattcattctcatgtcttctctct |
7452977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 7452618 - 7452662
Alignment:
| Q |
20 |
agtgttttgtgggaaagtttagaacacgatctgacccttcactct |
64 |
Q |
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| T |
7452618 |
agtgttttgtgggaaagtttagaacacgatatgacccttcactct |
7452662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 7452990 - 7453025
Alignment:
| Q |
124 |
tgctgctactgctacatcaccactcactcaggtttg |
159 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
7452990 |
tgctgctactactacatcaccactcactcaggtttg |
7453025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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