View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14628_high_1 (Length: 495)
Name: NF14628_high_1
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14628_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 15 - 479
Target Start/End: Original strand, 39211900 - 39212364
Alignment:
| Q |
15 |
cctgtgattcctcgctttgactcaacggcgcggtggcgtttgaagaaccaccaaagaatctagaacgatgaccgcattgtttatgaataatctcaccaca |
114 |
Q |
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| T |
39211900 |
cctgcgattcctcgctttgactcaacggcgcggtggcgtttgaagaaccaccaaagaatctagaacgatgaccgcattgtttatgaataatctcaccaca |
39211999 |
T |
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| Q |
115 |
taaacccgggttatctgaaaacaaagccggtttaaaccgtgaaagagttttcgtaacaggaaccggaccggtgaggttattagcggagatgttaaaaact |
214 |
Q |
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| T |
39212000 |
taaacccgggttatctgaaaacaaagccggtttaaaccgtgaaagagttttcgtaacaggaaccggaccggtgaggttattagcggagatgttaaaaact |
39212099 |
T |
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| Q |
215 |
tttaaatcagtttggttaaaagaaggaagagaaccggtgaatgagtttgagtcgaggcggagaataataagacggtcgaggagagttaactgaaccggaa |
314 |
Q |
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| T |
39212100 |
tttaaatcagtttggttaaaagaaggaagagaaccggtgaatgagttagagtcgaggcggagaataataagacggtcgaggagagttaactgaaccggaa |
39212199 |
T |
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| Q |
315 |
gtgaaccggtgaggttgttatgagagagtgaaagagtgatgagtctatggaggaagagaatggaaggagggaatgaaccggagaaattattccggtcgag |
414 |
Q |
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| T |
39212200 |
gtgaaccagtgaggttgttatgagagagtgaaagagtgatgagtctatggaggaagagaatggaaggagggaatgaaccggagaaattattccggtcgag |
39212299 |
T |
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| Q |
415 |
gaagagtgatttgaggtttgtaagtggagaaagatctggaataggtccagagagcgagttgttac |
479 |
Q |
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| T |
39212300 |
gaagagtgatttgaggtttgtaagtggagaaagatctggaataggtccagagagcgagttgttac |
39212364 |
T |
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