View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14628_high_6 (Length: 296)
Name: NF14628_high_6
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14628_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 68 - 280
Target Start/End: Original strand, 28394240 - 28394453
Alignment:
| Q |
68 |
ttagaatattttttgagctgaagtttagttattgttttggcatccaataattgtattttannnnnnnnn-caatttctaattaaccttactacatattgc |
166 |
Q |
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| T |
28394240 |
ttagaatattttttgagctgaagtttagttattgttttggcatccaataattgtatttttttatttttttcaatttctaattaaccttactacatattgc |
28394339 |
T |
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| Q |
167 |
attttctttgagtatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatcatattatatagctaaaattgatcctacaatacgttga |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28394340 |
attttctttgagtatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatcatattatatagctaaaattgatcctacaatacgttga |
28394439 |
T |
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| Q |
267 |
atcaatgaaaaaat |
280 |
Q |
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|||||||||||||| |
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| T |
28394440 |
atcaatgaaaaaat |
28394453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28394098 - 28394166
Alignment:
| Q |
1 |
aacttgtgtcagcatgatgacatagattctaagagcaacaaatccaaaagagtacacaaacatcttgtt |
69 |
Q |
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| T |
28394098 |
aacttgtgtcagcatgatgacatagattctaagagcaacaaatccaaaagagtacacaaacatcttgtt |
28394166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 28390759 - 28390836
Alignment:
| Q |
187 |
agcctatatagggctcacatgaagcaatcacaatcaataaatcatattatatagctaaaattgatcctacaatacgtt |
264 |
Q |
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| T |
28390759 |
agcctatatagggctcacatgaagcaatcacaatcaataaataatattgtatagctaacattgatcgcacaatacgtt |
28390836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 28369799 - 28369902
Alignment:
| Q |
179 |
tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaa-aattgatcctacaatacgttgaatcaatgaaa |
276 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||| ||||||||| |||||||||||||||| | |||||||| || |
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| T |
28369799 |
tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaaactatattctatagctaacggttgatcctacaatacgctcaatcaatgcaa |
28369898 |
T |
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| Q |
277 |
aaat |
280 |
Q |
| |
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|||| |
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|
| T |
28369899 |
aaat |
28369902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 28377617 - 28377720
Alignment:
| Q |
179 |
tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaa-aattgatcctacaatacgttgaatcaatgaaa |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||| ||||||||| |||||||||||||||| | |||||||| || |
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| T |
28377617 |
tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaaactatattctatagctaacggttgatcctacaatacgctcaatcaatgcaa |
28377716 |
T |
|
| Q |
277 |
aaat |
280 |
Q |
| |
|
|||| |
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|
| T |
28377717 |
aaat |
28377720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 28385439 - 28385542
Alignment:
| Q |
179 |
tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaa-aattgatcctacaatacgttgaatcaatgaaa |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||| ||||||||| |||||||||||||||| | |||||||| || |
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| T |
28385439 |
tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaaactatattctatagctaacggttgatcctacaatacgctcaatcaatgcaa |
28385538 |
T |
|
| Q |
277 |
aaat |
280 |
Q |
| |
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|||| |
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|
| T |
28385539 |
aaat |
28385542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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