View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14628_low_1 (Length: 822)

Name: NF14628_low_1
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14628_low_1
NF14628_low_1
[»] chr2 (5 HSPs)
chr2 (1-803)||(13447418-13448221)
chr2 (4-392)||(13454315-13454689)
chr2 (7-140)||(13439919-13440052)
chr2 (140-248)||(13439829-13439937)
chr2 (416-479)||(13454185-13454249)
[»] chr5 (2 HSPs)
chr5 (1-139)||(28385054-28385192)
chr5 (5-131)||(12540413-12540539)
[»] chr4 (4 HSPs)
chr4 (1-139)||(48961011-48961149)
chr4 (11-139)||(48967178-48967306)
chr4 (37-138)||(48965050-48965151)
chr4 (1-81)||(48912666-48912746)
[»] chr8 (1 HSPs)
chr8 (1-140)||(12641802-12641941)
[»] chr7 (1 HSPs)
chr7 (9-128)||(3417856-3417975)


Alignment Details
Target: chr2 (Bit Score: 705; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 1 - 803
Target Start/End: Complemental strand, 13448221 - 13447418
Alignment:
Q  1 ggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13448221 ggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaagaaggtggctcgtcttataataat 13448122  T
Q  101 ttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448121 ttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaatttt 13448022  T
Q  201 ttcaacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatgttttggattttttctatgaattcaagtgacttgttttctct-ttttggat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13448021 ttcaacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatgttttggattttttctatgaattcaagtgacttgttttctcttttttggat 13447922  T
Q  300 tttgattccacaatacctgccacaagtactctcaaatcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagtttaaactta 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  13447921 tttgattccacaatacctgccacaagtactctcaaatcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagttt-tcctta 13447823  T
Q  400 attgttttgattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtca 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447822 attgttttgattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtca 13447723  T
Q  500 acacttctgtcagtctgacattgctgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggtttctgtactttaaatctctagattttgtggg 599  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13447722 acacttctgtcagtctgacattgccgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggttcctgtactttaaatctctagattttgtggg 13447623  T
Q  600 atcctgtcnnnnnnnnnnnnnnnngaccgaagattagcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtct 699  Q
    ||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447622 atcctgtctgtttctttttcttttgaccgaagattagcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtct 13447523  T
Q  700 ggttttcaatcatctacaatctgtgcaccaacactgttgta-ttttttcgatggatctcttgtcgtgttggtgatccattggtgtcgtcgttgaggcgtc 798  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13447522 ggttttcaatcatctacaatctgtgcaccaacactgttgtatttttttcgatggatctcttgtcgtgttgatgatccattggtgtcgtcgttgaggcgtc 13447423  T
Q  799 tgtcg 803  Q
    |||||    
T  13447422 tgtcg 13447418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 4 - 392
Target Start/End: Complemental strand, 13454689 - 13454315
Alignment:
Q  4 cggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttg 103  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||| |||| ||||| |||||||||||||||    
T  13454689 cggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaaaaggtggctcatcttataataatttg 13454590  T
Q  104 ttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttc 203  Q
    |||||||||||||| |||||||||                  ||||||||| ||||||||| | |||||||||||||| ||| ||||| ||| |||||||    
T  13454589 ttggctttgattgatgaacttaaa------------------agattgagaaacctcaagccgcatgattaattcaaaggagcattgtgtaagttttttc 13454508  T
Q  204 aacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatgt--tttggattttttctatgaattcaagtgacttgttttct-ctttttggatt 300  Q
    ||||||| |||||||||| || |||||||||||| ||||| ||  |||  | || |||||    ||||||||||| || |  |||| |  ||||||||||    
T  13454507 aactttttctaataacattgttgtttcgtcaagcagaagtatgtgtgttatatgaattttgcacatgaattcaagcgattccttttatgttttttggatt 13454408  T
Q  301 ttgattccacaatacctgccacaagtactctcaaatcaatgaagtaac-atttagctactctggcagatttaacatgaattttcgaatagttt 392  Q
    ||||||| |||||| |||| |||||||||||||||||||||||| ||| || |||||||  |||||||||||| ||||||||| |||||||||    
T  13454407 ttgattctacaatatctgcgacaagtactctcaaatcaatgaagcaacaatatagctaccatggcagatttaatatgaatttttgaatagttt 13454315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 13440052 - 13439919
Alignment:
Q  7 tggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttg 106  Q
    ||||||||||||| ||||||| ||||||| ||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  13440052 tggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaagaaggtggctcgtcttataataatttgttg 13439953  T
Q  107 gctttgattgacgaacttaaaagatcgagagacc 140  Q
    ||||| ||||| ||||||||||||| ||||||||    
T  13439952 gctttaattgaagaacttaaaagattgagagacc 13439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 13439937 - 13439829
Alignment:
Q  140 cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcgg 239  Q
    ||||||||||||||||||| |||||   |||||||||||||| || |||||||||  |||||||||| | ||||||||| || || | |||||||||| |    
T  13439937 cttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctatgttttttcaacctatcctaataatattgttggttcgtcaagcag 13439838  T
Q  240 aagtgtgaa 248  Q
    |||||||||    
T  13439837 aagtgtgaa 13439829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 416 - 479
Target Start/End: Complemental strand, 13454249 - 13454185
Alignment:
Q  416 ttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttt-aatttttcaa 479  Q
    ||||| ||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||||    
T  13454249 ttttgttgtgtacgtggttcttctaacttcttaatgtgttttcgcatttattttcaatttttcaa 13454185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 28385192 - 28385054
Alignment:
Q  1 ggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataat 100  Q
    ||||||||| ||||||||||||||||| || | || |||||||||||| ||||| || |||| || |||| || ||||||| || || ||||||||||||    
T  28385192 ggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggttcctcttataataat 28385093  T
Q  101 ttgttggctttgattgacgaacttaaaagatcgagagac 139  Q
    ||||| ||||| || |||||||||||||||| |||||||    
T  28385092 ttgttagctttaatcgacgaacttaaaagattgagagac 28385054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 12540539 - 12540413
Alignment:
Q  5 ggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgt 104  Q
    |||||| |||||||||||||||| || |||| ||| |||||| ||||||| || |||| || |||| |||||||||| || || ||| ||||||||||||    
T  12540539 ggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaagaaggtggttcctctcataataatttgt 12540440  T
Q  105 tggctttgattgacgaacttaaaagat 131  Q
    |  ||||||| |||||| |||||||||    
T  12540439 tatctttgatcgacgaaattaaaagat 12540413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 48961149 - 48961011
Alignment:
Q  1 ggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataat 100  Q
    |||||||||||||||||| ||| |||| || |  | ||||||||||||||| || || ||||||  |||| |||||| ||| ||||| ||| ||||||||    
T  48961149 ggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataat 48961050  T
Q  101 ttgttggctttgattgacgaacttaaaagatcgagagac 139  Q
    ||||||||||| ||||| || |||||||||| |||||||    
T  48961049 ttgttggctttaattgatgatcttaaaagattgagagac 48961011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 48967306 - 48967178
Alignment:
Q  11 gatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctt 110  Q
    ||||||||||| || ||||| | || ||||||||| ||||||||||| |||| || |||  |||||||||| |||| |||||||||||||||  | ||||    
T  48967306 gatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtggcttgtcttataataatttacttgctt 48967207  T
Q  111 tgattgacgaacttaaaagatcgagagac 139  Q
    ||||||| || |||||||||  |||||||    
T  48967206 tgattgatgatcttaaaagaatgagagac 48967178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 48965151 - 48965050
Alignment:
Q  37 tgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgaga 136  Q
    ||||| ||||||||||||||| |||| || ||| ||||||||||| ||||||||| |||| |||||||| || |||||||| || || ||||||| ||||    
T  48965151 tgctcaagagtttggagaaaaggctagacgagccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgaga 48965052  T
Q  137 ga 138  Q
    ||    
T  48965051 ga 48965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 48912666 - 48912746
Alignment:
Q  1 ggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagg 81  Q
    |||| |||||||||||||||| || ||||| | |||||||||||||||||| || ||||||| ||| || ||| |||||||    
T  48912666 ggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg 48912746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 12641802 - 12641941
Alignment:
Q  1 ggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataat 100  Q
    ||||| ||||||||||||| |  | ||||| | || ||||| |||||||||  |||| |||| ||| ||| || ||||||| || |||||| |||| |||    
T  12641802 ggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttgaagaaggcgggtcgtctcataacaat 12641901  T
Q  101 ttgttggctttgattgacgaacttaaaagatcgagagacc 140  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  12641902 ttgttggctttgattaacgatcttaaaagatcgagagacc 12641941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 3417856 - 3417975
Alignment:
Q  9 gtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggc 108  Q
    ||||||| ||||||  ||| || |||| |||||||||| ||||||| || |||| || ||||||||||||||| || || ||  || ||||||||||  |    
T  3417856 gtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaagaaggtggttcctcacatcataatttgttaac 3417955  T
Q  109 tttgattgacgaacttaaaa 128  Q
    |||||| |||||||||||||    
T  3417956 tttgatcgacgaacttaaaa 3417975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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