View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14628_low_2 (Length: 645)
Name: NF14628_low_2
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14628_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 14 - 630
Target Start/End: Complemental strand, 47686396 - 47685780
Alignment:
| Q |
14 |
caacttggaccaagatacatacaacctttcatacaccatcttgaaaaattcccgaaagccgaatccaaacattcagtacattcttgtttagacaaatctg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47686396 |
caacttggaccaagatacatacaacctttcatacaccatcttgaaaaattcccgaaagccgaatccaaacattcagtacattcttgtttagacaaatctg |
47686297 |
T |
|
| Q |
114 |
gtgtacactgaaccaaaccatagatagtgtcattaacatcccttctactacttgattcattcattactttcacactcttttcagcaaacttcttacgcga |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47686296 |
gtgtacactgaaccaaaccataaatagtgtcattaacatcacttctactacttgattcattcattactttcacactcttttcagcaaacttcttacgcga |
47686197 |
T |
|
| Q |
214 |
atcaccatcaatggccacacttttaagttcatccaacaaatcaataagtgtctgattaaatgcatcattccctactgttttgccttccatatcgaaatac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47686196 |
atcaccatcaatggccacacttttaagttcatccaacaaatcaataagtgtctgattaaatgcatcattccctactgttttgccttccatatcgaaatac |
47686097 |
T |
|
| Q |
314 |
ttacttgttttagtttccatgacaccaaaaattgaatcatttgaataacgtaagatacacaagtcatagtaaccaattgcttctttttgttctccacatc |
413 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47686096 |
ttacttgttttagtttccatgataccaaaaattgaatcatttgaataacgtaagatacacaagtcatagtaaccaattgcttctttttgttctccacatc |
47685997 |
T |
|
| Q |
414 |
gatctgtcagaagggttgcagattttttcaaacaaccacgacactcctcttgattaatgtctcctctacaaaagcctattgcgtttattttgtcgggtcc |
513 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47685996 |
gatctgtcagaagggttgcagattttttcaaacaaccgcgacactcctcttgattaatgtctcctctacaaaagcctattgcgtttattttgtcgggtcc |
47685897 |
T |
|
| Q |
514 |
ttcaccgtatgagaaattgtagaaaccatagtctannnnnnngtcggaatatattagttctaaaacagtgtcacggcttatctggtaggcactaccgccg |
613 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
47685896 |
ttcaccatatgagaaattgtagaaaccatagtctatttttttgtcggaatatattagttctaaaacagtgtcacggtttatctggtaggcactatcgccg |
47685797 |
T |
|
| Q |
614 |
gtgaagtttccacattc |
630 |
Q |
| |
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||||||||||||||||| |
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| T |
47685796 |
gtgaagtttccacattc |
47685780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 14 - 624
Target Start/End: Complemental strand, 47674282 - 47673672
Alignment:
| Q |
14 |
caacttggaccaagatacatacaacctttcatacaccatcttgaaaaattcccgaaagccgaatccaaacattcagtacattcttgtttagacaaatctg |
113 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||| ||| | |
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| T |
47674282 |
caacttggaccaagatataaacaacctttcatacaccatcttgaaaaacctccgaaagccgaatctaaacattcattacattcttgcttagacagatccg |
47674183 |
T |
|
| Q |
114 |
gtgtacactgaaccaaaccatagatagtgtcattaacatcccttctactacttgattcattcattactttcacactcttttcagcaaacttcttacgcga |
213 |
Q |
| |
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|||||||||||||||||||||| || ||||||||| || || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47674182 |
gtgtacactgaaccaaaccataaattgtgtcattagtattactactactacttgattcatcaattactttcacactcttttcagcaaacttcttacgcga |
47674083 |
T |
|
| Q |
214 |
atcaccatcaatggccacacttttaagttcatccaacaaatcaataagtgtctgattaaatgcatcattccctactgttttgccttccatatcgaaatac |
313 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||| | | ||| || ||| |||| |||||| |
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| T |
47674082 |
atcaccatcagcggccacggttttaagttcatccaacaaatcaagaagtgtttgattaaatgcatcatccgcccttgtattagctttgatattgaaataa |
47673983 |
T |
|
| Q |
314 |
ttacttgttttagtttccatgacaccaaaaattgaatcatttgaataacgtaagatacacaagtcatagtaaccaattgcttctttttgttctccacatc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
47673982 |
ttacttgttttagtttccatgacaccaaaaattgaatcatttgaataacgtaaactacacaagtcgaagtaaccaattgcttctttttgtattccacatc |
47673883 |
T |
|
| Q |
414 |
gatctgtcagaagggttgcagattttttcaaacaaccacgacactcctcttgattaatgtctcctctacaaaagcctattgcgtttattttgtcgggtcc |
513 |
Q |
| |
|
|||| ||||| || || ||| |||||||||||| ||||| |||||| |||||||||||||||||||||| || ||||| |||| |||||| ||| | |
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| T |
47673882 |
gatccacgagaagtgtagccgatgatttcaaacaaccgcgacattcctctggattaatgtctcctctacaaaaaccaattgcatttactttgtcaggttc |
47673783 |
T |
|
| Q |
514 |
ttcaccgtatgagaaattgtagaaaccatagtctannnnnnngtcggaatatattagttctaaaacagtgtcacggcttatctggtaggcactaccgccg |
613 |
Q |
| |
|
||| || || ||||||||||||||||| ||||||| ||| ||||||||| | |||||||| ||||||||| | |||||||||||||||||||| |
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| T |
47673782 |
ttcgccatacgagaaattgtagaaaccgtagtctatttcttggtctgaatatatttgctctaaaaccgtgtcacggttgatctggtaggcactaccgcca |
47673683 |
T |
|
| Q |
614 |
gtgaagtttcc |
624 |
Q |
| |
|
||||||||||| |
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|
| T |
47673682 |
gtgaagtttcc |
47673672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 548
Target Start/End: Complemental strand, 47692481 - 47692379
Alignment:
| Q |
446 |
caaccacgacactcctcttgattaatgtctcctctacaaaagcctattgcgtttattttgtcgggtccttcaccgtatgagaaattgtagaaaccatagt |
545 |
Q |
| |
|
||||||||||| |||||| | | ||||||||||||||| | || ||||| |||| ||||| | | |||| | ||| |||||||||||||||||||| | |
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| T |
47692481 |
caaccacgacagtcctctggttcaatgtctcctctacagattccaattgcatttaccttgtcagcttcttctcggtacgagaaattgtagaaaccataat |
47692382 |
T |
|
| Q |
546 |
cta |
548 |
Q |
| |
|
||| |
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|
| T |
47692381 |
cta |
47692379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 548
Target Start/End: Complemental strand, 47694939 - 47694838
Alignment:
| Q |
447 |
aaccacgacactcctcttgattaatgtctcctctacaaaagcctattgcgtttattttgtcgggtccttcaccgtatgagaaattgtagaaaccatagtc |
546 |
Q |
| |
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||||||| || |||||| | | ||| ||||||||||||| || |||||||||| |||| | ||| |||| ||||| || ||||||||||||| ||||| |
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|
| T |
47694939 |
aaccacggcaatcctctggttcaatatctcctctacaaattccaattgcgtttactttgccaggttcttctccgtacgaaaaattgtagaaactgtagtc |
47694840 |
T |
|
| Q |
547 |
ta |
548 |
Q |
| |
|
|| |
|
|
| T |
47694839 |
ta |
47694838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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