View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14628_low_3 (Length: 522)

Name: NF14628_low_3
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14628_low_3
NF14628_low_3
[»] chr4 (12 HSPs)
chr4 (230-512)||(52813953-52814236)
chr4 (317-512)||(41879431-41879627)
chr4 (346-465)||(40483746-40483865)
chr4 (346-455)||(52619512-52619621)
chr4 (366-457)||(20543688-20543779)
chr4 (353-407)||(9690012-9690066)
chr4 (346-447)||(18443375-18443476)
chr4 (353-411)||(48029240-48029298)
chr4 (353-406)||(53569599-53569652)
chr4 (353-453)||(27299756-27299856)
chr4 (420-453)||(19119734-19119767)
chr4 (378-458)||(56337943-56338023)
[»] chr1 (10 HSPs)
chr1 (230-512)||(5287465-5287748)
chr1 (83-217)||(48390901-48391035)
chr1 (359-510)||(40563950-40564101)
chr1 (346-478)||(18959771-18959903)
chr1 (343-446)||(28357471-28357574)
chr1 (353-453)||(13868265-13868365)
chr1 (353-457)||(33150585-33150689)
chr1 (59-94)||(48390844-48390879)
chr1 (16-50)||(48390788-48390822)
chr1 (353-410)||(49458320-49458377)
[»] chr7 (8 HSPs)
chr7 (231-512)||(27096609-27096891)
chr7 (231-512)||(27181412-27181694)
chr7 (346-512)||(8723514-8723680)
chr7 (341-461)||(27724546-27724666)
chr7 (346-465)||(44846215-44846334)
chr7 (346-459)||(34103062-34103175)
chr7 (427-465)||(13845519-13845557)
chr7 (353-405)||(19512008-19512060)
[»] chr2 (8 HSPs)
chr2 (234-517)||(1159333-1159617)
chr2 (422-512)||(38927552-38927642)
chr2 (353-461)||(6823004-6823112)
chr2 (366-457)||(11195954-11196045)
chr2 (368-459)||(18634570-18634661)
chr2 (353-448)||(31265815-31265910)
chr2 (346-450)||(7300261-7300364)
chr2 (376-457)||(44941260-44941341)
[»] chr5 (8 HSPs)
chr5 (230-425)||(374769-374965)
chr5 (346-459)||(379496-379609)
chr5 (350-447)||(14055095-14055192)
chr5 (346-411)||(13735380-13735445)
chr5 (344-405)||(26904617-26904678)
chr5 (353-478)||(35378579-35378704)
chr5 (353-458)||(5909508-5909613)
chr5 (420-459)||(16906942-16906981)
[»] chr3 (14 HSPs)
chr3 (232-470)||(13700559-13700798)
chr3 (318-512)||(7935497-7935691)
chr3 (346-510)||(21399966-21400130)
chr3 (355-510)||(47748755-47748910)
chr3 (353-458)||(34829009-34829114)
chr3 (346-406)||(14306855-14306915)
chr3 (346-461)||(46249299-46249414)
chr3 (346-459)||(35216345-35216458)
chr3 (346-408)||(4963947-4964009)
chr3 (346-447)||(5789937-5790038)
chr3 (346-405)||(15275474-15275533)
chr3 (346-450)||(2427733-2427837)
chr3 (348-408)||(15792748-15792808)
chr3 (341-405)||(19874830-19874894)
[»] scaffold0189 (1 HSPs)
scaffold0189 (232-512)||(5558-5837)
[»] chr8 (6 HSPs)
chr8 (361-512)||(12247935-12248086)
chr8 (346-459)||(15438752-15438865)
chr8 (346-459)||(15530056-15530169)
chr8 (346-453)||(9510379-9510486)
chr8 (346-408)||(6244732-6244794)
chr8 (348-448)||(9492264-9492363)
[»] chr6 (6 HSPs)
chr6 (346-478)||(14497723-14497853)
chr6 (346-459)||(31706354-31706467)
chr6 (368-410)||(33095576-33095618)
chr6 (341-405)||(29977513-29977577)
chr6 (346-450)||(6936975-6937079)
chr6 (341-405)||(19349523-19349587)
[»] scaffold0246 (1 HSPs)
scaffold0246 (346-465)||(21685-21804)
[»] scaffold0321 (1 HSPs)
scaffold0321 (341-459)||(17618-17736)
[»] scaffold0048 (2 HSPs)
scaffold0048 (345-459)||(50898-51012)
scaffold0048 (345-459)||(64193-64307)
[»] scaffold0555 (1 HSPs)
scaffold0555 (353-410)||(7258-7315)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 230 - 512
Target Start/End: Original strand, 52813953 - 52814236
Alignment:
Q  230 ggagaaatgaaaatgaaatattataacttc-gcgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaactgtcacaaagt 328  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  52813953 ggagaaataaaaatgaaatattataacttcagcgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaagacaactgtcacaaagt 52814052  T
Q  329 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcc 428  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  52814053 ataattacaaggaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagcc 52814152  T
Q  429 accacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||| || || |||||| |||||| |||||    
T  52814153 accacaacgaatgaaattttactttatcgaataactgctcaataggtgttgctatgttgttgaacaatctgttgtttctttcat 52814236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 512
Target Start/End: Complemental strand, 41879627 - 41879431
Alignment:
Q  317 ctgtcacaaagtataattataag-gaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttg 415  Q
    ||||||||||||||| ||| ||| ||||| |||||| ||||| | ||||  ||||||||||||||||||  ||||||||||||||| ||||||||||||     
T  41879627 ctgtcacaaagtatatttacaagagaaaagtcagtcgatacctagacaaagtaaagggttcgaccaccagttttgagaaccgtacataaaagtggtttta 41879528  T
Q  416 ttgcctttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    ||  |||| |  ||||||||||| |||||||||||||||||||| |  |||||||||| |||| | ||||| || || | |||| ||||||||||||    
T  41879527 ttagcttttaatcaccacaacgagtgaaatttaactttatctaagagttgctcaatagatgtttcagtgttattgaacagtctgttgtttcgttcat 41879431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 465
Target Start/End: Original strand, 40483746 - 40483865
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||||| |||||||||  |||| |||| ||||||||| || |||||||||| |||||| ||||  || ||  ||||||||||||| |  |||||||||    
T  40483746 tcagtcaagacccaaacacaataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaat 40483845  T
Q  446 ttaactttatctaacaactg 465  Q
    ||||||| |||||| |||||    
T  40483846 ttaacttgatctaataactg 40483865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 455
Target Start/End: Complemental strand, 52619621 - 52619512
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| ||||||||||| |  ||||||| ||||||||| || ||||| | |||||||||| |||| || ||| |||| |||||||| | ||||||||||    
T  52619621 tcagtcgatacccaaacactgaaaagggtccgaccaccatctctgagagctgtacacaaaattggtgtttttggcttttagccaccaaagcgaatgaaat 52619522  T
Q  446 ttaactttat 455  Q
    ||| ||||||    
T  52619521 ttagctttat 52619512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 457
Target Start/End: Original strand, 20543688 - 20543779
Alignment:
Q  366 ataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatct 457  Q
    ||||||||| ||||||||| ||||| | ||| |||| |||| ||| ||||||  ||||||||||||| || ||||||||| |||||||||||    
T  20543688 ataaagggtccgaccaccatctttgggtaccatacataaaattggctttgttagctttaagccaccataaagaatgaaatctaactttatct 20543779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 9690012 - 9690066
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaag 407  Q
    ||||||||||||  |||||||||||||||||| ||||||||||| ||||||||||    
T  9690012 atacccaaacaaagtaaagggttcgaccaccatctttgagaaccatacacaaaag 9690066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 447
Target Start/End: Complemental strand, 18443476 - 18443375
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| |||| |||||||  ||||||||||||||||||  | ||||||| ||||||||||||||| || |   |||| | |||||| ||||||||||||    
T  18443476 tcagtcgatactcaaacaaagtaaagggttcgaccaccatttctgagaactgtacacaaaagtggtgttatcaacttttaaccaccaaaacgaatgaaat 18443377  T
Q  446 tt 447  Q
    ||    
T  18443376 tt 18443375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 48029240 - 48029298
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggt 411  Q
    |||||||||||| | ||| ||| ||||||||| ||||||||||||||||||||| ||||    
T  48029240 atacccaaacaaaacaaatggtccgaccaccatctttgagaaccgtacacaaaattggt 48029298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 53569599 - 53569652
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaa 406  Q
    ||||||||||||  |||||||| ||||||||| || ||||||||||||||||||    
T  53569599 atacccaaacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaa 53569652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 453
Target Start/End: Original strand, 27299756 - 27299856
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 452  Q
    |||||||||||  ||||||||| | ||||||| || |||| ||||| |||||||||||| || ||  ||||||||||||| || || ||||| || ||||    
T  27299756 atacccaaacataataaagggtccaaccaccatctgtgagtaccgtgcacaaaagtggtcttattagctttaagccaccaaaaagagtgaaactttactt 27299855  T
Q  453 t 453  Q
    |    
T  27299856 t 27299856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 19119734 - 19119767
Alignment:
Q  420 ctttaagccaccacaacgaatgaaatttaacttt 453  Q
    ||||||||||||| ||||||||||||||||||||    
T  19119734 ctttaagccaccataacgaatgaaatttaacttt 19119767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 56338023 - 56337943
Alignment:
Q  378 accaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatcta 458  Q
    ||||||| ||||||||||| || ||||||||||  |||||  |||| ||||||||||| |||  | ||||||| |||||||    
T  56338023 accaccatctttgagaaccataaacaaaagtggcattgttagcttttagccaccacaaagaagtatatttaaccttatcta 56337943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 230 - 512
Target Start/End: Original strand, 5287465 - 5287748
Alignment:
Q  230 ggagaaatgaaaatgaaatattataacttc-gcgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaactgtcacaaagt 328  Q
    |||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  5287465 ggagaaataaaaatgaaatattataacttcagtgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaagacaactgtcacaaagt 5287564  T
Q  329 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcc 428  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  5287565 ataattacaaggaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagcc 5287664  T
Q  429 accacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||| || || |||||| |||||| |||||    
T  5287665 accacaacgaatgaaattttactttatcgaataactgctcaataggtgttgctatgttgttgaacaatctgttgtttctttcat 5287748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 48390901 - 48391035
Alignment:
Q  83 tagtttcaagttgtatagcggtcaagtcttatgtatgaagaaagtgagggaccgacatggttgggtttttgagtgacataatatgatttcaaagtttcaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48390901 tagtttcaagttgtatagcggtcaagtcttatgtatgaagaaagtgagggaccaacatggttgggtttttgagtgacataatatgatttcaaagtttcaa 48391000  T
Q  183 tgatggctgggggaaataaaatcatacatagttac 217  Q
    |||||||| ||||||||||||||||||||||||||    
T  48391001 tgatggctaggggaaataaaatcatacatagttac 48391035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 359 - 510
Target Start/End: Complemental strand, 40564101 - 40563950
Alignment:
Q  359 aaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatcta 458  Q
    ||||||| || | |||| ||||||||||||||||||| |||||||||| |||| || ||| ||||||||||||||||| |||| ||||||||||||| ||    
T  40564101 aaacaatgtagatggtttgaccaccaactttgagaactgtacacaaaaatggtattattggctttaagccaccacaacaaatggaatttaactttatata 40564002  T
Q  459 acaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttc 510  Q
    | |  ||||||||||||||| | |||||||| || | | || ||||||||||    
T  40564001 atagttgctcaataggtgtttcagtgtttttgaacagtttgttgtttcgttc 40563950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 478
Target Start/End: Original strand, 18959771 - 18959903
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| ||||| | ||||  |||| ||| ||||||||| || | ||| | |||||||||||| ||||| ||| |||| | ||||||||| ||||||| |    
T  18959771 tcagtcgatacctagacaaagtaaaaggtccgaccaccagctcttagatctgtacacaaaagtagttttattggcttttaaccaccacaatgaatgaagt 18959870  T
Q  446 ttaactttatctaacaactgctcaataggtgtt 478  Q
    |||||||| ||||| | ||| | ||||||||||    
T  18959871 ttaactttttctaagagctgtttaataggtgtt 18959903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 446
Target Start/End: Original strand, 28357471 - 28357574
Alignment:
Q  343 aaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatga 442  Q
    ||||||||| ||||||||||||| ||| ||||  ||||||||| | ||||||| |||||||||| |||| || |   |||| |||||||| || ||||||    
T  28357471 aaatcagtcgatacccaaacaatgtaaggggtctgaccaccaattatgagaactgtacacaaaaatggtgttatgagcttttagccaccataaagaatga 28357570  T
Q  443 aatt 446  Q
    ||||    
T  28357571 aatt 28357574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 453
Target Start/End: Complemental strand, 13868365 - 13868265
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 452  Q
    |||||||||||  ||||||||| ||||||||| ||||| | |||||||| |||| |||  || ||  |||| ||||||||||| || ||| |||||||||    
T  13868365 atacccaaacataataaagggtccgaccaccatctttgtgtaccgtacataaaattggccttattagcttttagccaccacaaagagtgatatttaactt 13868266  T
Q  453 t 453  Q
    |    
T  13868265 t 13868265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 457
Target Start/End: Original strand, 33150585 - 33150689
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 452  Q
    ||||||| |||  ||||||| | ||||||||| ||||||| |||||||| |||| ||  ||||||  ||||||||||||| || || |||||| | ||||    
T  33150585 atacccagacataataaaggttccgaccaccatctttgagtaccgtacataaaattgactttgttagctttaagccaccataaagagtgaaatcttactt 33150684  T
Q  453 tatct 457  Q
    |||||    
T  33150685 tatct 33150689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 48390844 - 48390879
Alignment:
Q  59 tttacatatatattgttagttttgtagtttcaagtt 94  Q
    |||||| |||||||||||||||||||||||||||||    
T  48390844 tttacacatatattgttagttttgtagtttcaagtt 48390879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 48390788 - 48390822
Alignment:
Q  16 ggatgtggtcaactttttcaacatcatcttcttca 50  Q
    ||||||||||||||||||| |||||||||||||||    
T  48390788 ggatgtggtcaactttttctacatcatcttcttca 48390822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 49458320 - 49458377
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgg 410  Q
    |||||||||||||  | ||||| ||||||||| |||||| ||||||||||||| ||||    
T  49458320 atacccaaacaatgcatagggtccgaccaccacctttgataaccgtacacaaatgtgg 49458377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 231 - 512
Target Start/End: Original strand, 27096609 - 27096891
Alignment:
Q  231 gagaaatgaaaatgaaatattataacttcg-cgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaa-ctgtcacaaagt 328  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| || || | || ||||||||||| ||||||||||||    
T  27096609 gagaaatcaaaatgaaatattataactacggcgatggaaacgctttagtacaaggtgtactaaa-tgatctaacccagtaaaaacaaactgtcacaaagt 27096707  T
Q  329 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcc 428  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27096708 ataattataagaaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagcc 27096807  T
Q  429 accacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |  |||||| ||||||||||||    
T  27096808 accacaacgaatgaaatttaactttatctaacaactgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcat 27096891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 231 - 512
Target Start/End: Complemental strand, 27181694 - 27181412
Alignment:
Q  231 gagaaatgaaaatgaaatattataacttcg-cgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaa-ctgtcacaaagt 328  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| || || | || ||||||||||| ||||||||||||    
T  27181694 gagaaatcaaaatgaaatattataactacggcgatggaaacgctttagtacaaggtgtactaaa-tgatctaacccagtaaaaacaaactgtcacaaagt 27181596  T
Q  329 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcc 428  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27181595 ataattataagaaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagcc 27181496  T
Q  429 accacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |  |||||| ||||||||||||    
T  27181495 accacaacgaatgaaatttaactttatctaacaactgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcat 27181412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 512
Target Start/End: Complemental strand, 8723680 - 8723514
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgtt-gcctttaagccaccacaacgaatgaaa 444  Q
    |||||| ||||| | |||| |||||||||||||||| ||| | |||| ||||||||||||||||||||| || | |||||| ||||||||| |||||| |    
T  8723680 tcagtcgatacctagacaagataaagggttcgaccaacaattctgaggaccgtacacaaaagtggttttattggactttaa-ccaccacaaagaatgata 8723582  T
Q  445 tttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    ||| |||||  |||| | ||  |||||||||||| |  |||| || || |||||| |||||| |||||    
T  8723581 tttcacttttcctaagagcttatcaataggtgtttcaatgttattgaacaatctgttgtttctttcat 8723514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 461
Target Start/End: Complemental strand, 27724666 - 27724546
Alignment:
Q  341 aaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaat 440  Q
    |||| |||||| ||||||||||||  |||||| | ||||||||| |||||||||||||||| |||| |||| ||  |  |||| | |||||| |||||||    
T  27724666 aaaagtcagtcgatacccaaacaaagtaaaggatccgaccaccatctttgagaaccgtacataaaattggtgttactagcttttaaccaccataacgaat 27724567  T
Q  441 gaaatttaactttatctaaca 461  Q
    || ||||  |||| |||||||    
T  27724566 gatattttgctttttctaaca 27724546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 465
Target Start/End: Complemental strand, 44846334 - 44846215
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||||| |||||||||  |||| |||| | |||| || || |||||||||| |||||| ||||| || ||  ||||||  ||||| || |||||||||    
T  44846334 tcagtcaagacccaaacacaataaggggtccaaccatcatctctgagaaccgtgcacaaatgtggtattattagctttaaatcaccataaagaatgaaat 44846235  T
Q  446 ttaactttatctaacaactg 465  Q
    ||||||| |||||| |||||    
T  44846234 ttaacttgatctaataactg 44846215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 34103062 - 34103175
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| ||||||||| ||  |||| ||| ||||||||| || || || ||| |||||||| |||  || ||| |||||||||| || ||||||||||||    
T  34103062 tcagtcgatacccaaataaagtaaatggtccgaccaccatctctgcgacccgcacacaaaattggcattattggctttaagccatcaaaacgaatgaaat 34103161  T
Q  446 ttaactttatctaa 459  Q
    ||||| || |||||    
T  34103162 ttaacattctctaa 34103175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 13845557 - 13845519
Alignment:
Q  427 ccaccacaacgaatgaaatttaactttatctaacaactg 465  Q
    |||||| || |||||||||||||||||||||||||||||    
T  13845557 ccaccaaaatgaatgaaatttaactttatctaacaactg 13845519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 19512008 - 19512060
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 405  Q
    |||||||||||||  | ||||| ||||||||| || |||||||||||||||||    
T  19512008 atacccaaacaattcatagggtccgaccaccatctctgagaaccgtacacaaa 19512060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 234 - 517
Target Start/End: Complemental strand, 1159617 - 1159333
Alignment:
Q  234 aaatgaaaatgaaatattataacttc-gcgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaa-ctgtcacaaagtata 331  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||| ||  |||||||||| |||||||||||||||    
T  1159617 aaatcaaaatgaaatattataacttcagcgatggaaacgctttagtacaaggtgtactaaa-tgttccaacccggtaaaaacaaactgtcacaaagtata 1159519  T
Q  332 attataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccacc 431  Q
    |||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||    
T  1159518 attataagaaaaagtcggtcaatacccaaacaatataaagggttcgaccaccaattttgagaaccgtacacaaaagtggtttttttagctttaagccacc 1159419  T
Q  432 acaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcatctcac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| || |||||||||||| ||||    
T  1159418 acaacgaatgaaatttaactttatctaacaactgctcaataggtgttgcagtgtttttgaacaatttgttgtttcgttcatttcac 1159333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 422 - 512
Target Start/End: Complemental strand, 38927642 - 38927552
Alignment:
Q  422 ttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||| ||||||    
T  38927642 ttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgcagtgtttttgaacaatctgttgttttgttcat 38927552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 353 - 461
Target Start/End: Original strand, 6823004 - 6823112
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 452  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||||||||| |||| || ||  |||| | |||||| ||||||||| ||||  |||    
T  6823004 atacccaaacaaagtaaagggttcgaccaccatctttgagaaccgtacacaaaattggtgttattagcttttaaccaccataacgaatgatattttgctt 6823103  T
Q  453 tatctaaca 461  Q
    | |||||||    
T  6823104 tttctaaca 6823112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 457
Target Start/End: Original strand, 11195954 - 11196045
Alignment:
Q  366 ataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatct 457  Q
    ||||||||| ||||||||| ||||||| |||| ||| |||| ||  ||||||  ||||||||||||| || || |||||||| |||||||||    
T  11195954 ataaagggtccgaccaccatctttgagtaccgaacataaaattgactttgttagctttaagccaccataaagagtgaaattttactttatct 11196045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 459
Target Start/End: Original strand, 18634570 - 18634661
Alignment:
Q  368 aaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatctaa 459  Q
    ||||||| ||||||||| || ||||| || |||||||| ||||| || ||  ||||||| ||||| ||| |||||||||||||||| |||||    
T  18634570 aaagggtccgaccaccatctctgagagccatacacaaacgtggtattattagctttaagtcaccaaaacaaatgaaatttaactttttctaa 18634661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 448
Target Start/End: Original strand, 31265815 - 31265910
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaattta 448  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| | |||||||||||||| || |   |||| |||||| | |||||||| ||||||    
T  31265815 atacccaaacaaagtaaagggtccgaccaccatctttgagaatcatacacaaaagtggtattatgagcttttagccactaaaacgaatggaattta 31265910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 450
Target Start/End: Original strand, 7300261 - 7300364
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| |||||||||||  | ||||||| ||||||||| |||||| ||||| ||||||| ||||   | ||| ||||||||||| | ||||| ||||||    
T  7300261 tcagtcgatacccaaacataacaaagggtccgaccaccatctttgacaaccgcacacaaacgtgg-catattggctttaagccactaaaacgagtgaaat 7300359  T
Q  446 ttaac 450  Q
    |||||    
T  7300360 ttaac 7300364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 44941341 - 44941260
Alignment:
Q  376 cgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatct 457  Q
    ||||||||| || || |||||||||||||| |||   |||||  |||| |||||||| ||||||||||| || |||||||||    
T  44941341 cgaccaccatctctgtgaaccgtacacaaatgtgacattgttagcttttagccaccaaaacgaatgaaactttactttatct 44941260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 230 - 425
Target Start/End: Complemental strand, 374965 - 374769
Alignment:
Q  230 ggagaaatgaaaatgaaatattataacttc-gcgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaactgtcacaaagt 328  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |||    
T  374965 ggagaaatgaaaatgaaatattataacttcagcgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaaaacaactgtcagagagt 374866  T
Q  329 ataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaa 425  Q
    ||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  374865 ataattacaaggaaaagtcagtcgatatccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaa 374769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 379496 - 379609
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| |||||||||||||| ||||||| |||||||||||| |||| | ||||||||||| | |  || ||  | ||||||||||| ||||||||||||    
T  379496 tcagtcgatacccaaacaatacaaagggtccgaccaccaactctgagtatcgtacacaaaattagcgttcttagccttaagccaccataacgaatgaaat 379595  T
Q  446 ttaactttatctaa 459  Q
    |||||||| |||||    
T  379596 ttaactttctctaa 379609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 447
Target Start/End: Complemental strand, 14055192 - 14055095
Alignment:
Q  350 tcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaattt 447  Q
    ||||||||||||||| ||||||||| || |||||| ||||||||||| ||||||||| |||| || ||  |||| | |||||| ||||||||| ||||    
T  14055192 tcaatacccaaacaaaataaagggtccggccaccatctttgagaaccatacacaaaattggtgttattatctttcaaccaccaaaacgaatgatattt 14055095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 411
Target Start/End: Complemental strand, 13735445 - 13735380
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggt 411  Q
    ||||||||||||||||||   |||||||||||||||||| || | ||| |||||||||||||||||    
T  13735445 tcagtcaatacccaaacacagtaaagggttcgaccaccatctctaagagccgtacacaaaagtggt 13735380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 26904678 - 26904617
Alignment:
Q  344 aatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 405  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||| |||||||| ||||||||    
T  26904678 aatcagtcgatacccaaacaatgtaaatggtccgaccaccaactctgagaaccatacacaaa 26904617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 478
Target Start/End: Complemental strand, 35378704 - 35378579
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 452  Q
    ||||||| |||| ||||| |||||||||||||| | |||  |||||||||||||||| |||| ||| | || ||||| |||||  ||||| |||| ||||    
T  35378704 atacccagacaagataaacggttcgaccaccaattctgaataccgtacacaaaagtgattttattggcctttagccatcacaaaaaatgatatttcactt 35378605  T
Q  453 tatctaacaactgctcaataggtgtt 478  Q
    | ||||| |  || ||||||||||||    
T  35378604 tttctaagagttgatcaataggtgtt 35378579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 353 - 458
Target Start/End: Complemental strand, 5909613 - 5909508
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 452  Q
    ||||||||||||   ||||||| ||||||||| || |||||| |||||||||||||||  || ||  |||| ||||||||  |||| |||||||| ||||    
T  5909613 atacccaaacaaatcaaagggtccgaccaccatctctgagaatcgtacacaaaagtggcgttatttgctttcagccaccaatacgagtgaaattttactt 5909514  T
Q  453 tatcta 458  Q
    | ||||    
T  5909513 tctcta 5909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 459
Target Start/End: Original strand, 16906942 - 16906981
Alignment:
Q  420 ctttaagccaccacaacgaatgaaatttaactttatctaa 459  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  16906942 ctttaagccaccaaaacgaatgaaatttaactttctctaa 16906981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 232 - 470
Target Start/End: Complemental strand, 13700798 - 13700559
Alignment:
Q  232 agaaatgaaaatgaaatattataacttcg-cgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaa-ctgtcacaaagta 329  Q
    |||||| |||||||||||| |||||| || |||||||||| |||||||||||||||||||||| || |||| |||   |||||||| |||||||||||||    
T  13700798 agaaatcaaaatgaaatataataactacggcgatgaaaacactttagtacaaggtgtactaaa-tgatccaacctgacaaaaacaaactgtcacaaagta 13700700  T
Q  330 taattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagcca 429  Q
    |||||| |||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||||||||||    
T  13700699 taattacaagagaaagtcagtcgatacccaaacaatataaagggttcgaccaccaactttgagaaacgtacacaaaagtgattttgttaactttaagcca 13700600  T
Q  430 ccacaacgaatgaaatttaactttatctaacaactgctcaa 470  Q
    ||||||  |||||||||| ||||||||||||| ||||||||    
T  13700599 ccacaagaaatgaaattttactttatctaacagctgctcaa 13700559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 318 - 512
Target Start/End: Original strand, 7935497 - 7935691
Alignment:
Q  318 tgtcacaaagtataattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgtt 417  Q
    |||||||||||||||||| ||  |||| |||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7935497 tgtcacaaagtataattacaaataaaagtcagtcgatacccagacaataaaaagggttcgactaccaactttgagaaccgtacacaaaagtggttttgtt 7935596  T
Q  418 gcctttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    | |||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||| | |||||||| || |  ||| ||||||||||||    
T  7935597 ggctttaagccaccacaaagaatgaaattttactttatctaacagctgttcaataggtgtttcagtgtttttgaacagcctgttgtttcgttcat 7935691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 346 - 510
Target Start/End: Original strand, 21399966 - 21400130
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||    
T  21399966 tcagtcgacacccaaacaatgtagagggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaat 21400065  T
Q  446 ttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttc 510  Q
    |||||||||||||| | |||||||||||||||| | |||||||| |||| |||| ||||||||||    
T  21400066 ttaactttatctaatagctgctcaataggtgtttcagtgtttttgaatagtctgttgtttcgttc 21400130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 355 - 510
Target Start/End: Original strand, 47748755 - 47748910
Alignment:
Q  355 acccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaacttta 454  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  47748755 acccaaacaatgtagagggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaacttta 47748854  T
Q  455 tctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttc 510  Q
    | ||| |  || |||||||||||| | |||||||| || |||||| | ||||||||    
T  47748855 tttaatagttgttcaataggtgtttcagtgtttttgaacaatctgttatttcgttc 47748910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 458
Target Start/End: Original strand, 34829009 - 34829114
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactt 452  Q
    |||| ||||||  ||||||||||||||||||| ||||||||| |||||| ||||||||  || ||  ||||||||||||| || || |||||||||||||    
T  34829009 atactcaaacataataaagggttcgaccaccatctttgagaatcgtacataaaagtggccttattagctttaagccaccaaaaggagtgaaatttaactt 34829108  T
Q  453 tatcta 458  Q
    | ||||    
T  34829109 tttcta 34829114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 406
Target Start/End: Original strand, 14306855 - 14306915
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaa 406  Q
    |||||| |||||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  14306855 tcagtcgatacccaaacaaaataaagggttcgaccaccatctctgagaaccgtacacaaaa 14306915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 461
Target Start/End: Complemental strand, 46249414 - 46249299
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| ||||||||||||  |||||||| ||||||||| ||||| ||||||||||||||| |||| || ||  |||| | |||||| ||||||||| ||    
T  46249414 tcagtcgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccgtacacaaaattggtgttattaacttttaaccaccataacgaatgatat 46249315  T
Q  446 ttaactttatctaaca 461  Q
    ||  |||| |||||||    
T  46249314 tttgctttttctaaca 46249299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 459
Target Start/End: Complemental strand, 35216458 - 35216345
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| |||||||||||||  | ||||| | ||||||| || |||| ||||||||||||| |||  || ||  | ||||||||||| ||| ||||||||    
T  35216458 tcagtcgatacccaaacaatgcatagggtccaaccaccatctctgagtaccgtacacaaaattggcgttcttagccttaagccaccataacaaatgaaat 35216359  T
Q  446 ttaactttatctaa 459  Q
    |||||||| |||||    
T  35216358 ttaactttctctaa 35216345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 4963947 - 4964009
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagt 408  Q
    |||||| ||||||| ||||  |||||||| ||||||||| || ||||||||||||||||||||    
T  4963947 tcagtcgatacccagacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaagt 4964009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 447
Target Start/End: Complemental strand, 5790038 - 5789937
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||||||||||| ||||  |||||||| | ||||||| || | ||| ||||||||||||||||| || ||  |||| | |||||| ||| ||||||||    
T  5790038 tcagtcaatacccagacaaagtaaagggtccaaccaccatctctcagagccgtacacaaaagtggtgttattagcttttaaccaccaaaacaaatgaaat 5789939  T
Q  446 tt 447  Q
    ||    
T  5789938 tt 5789937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 15275474 - 15275533
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 405  Q
    |||||| ||||||||||| |||||||||| |||| ||||| | |||||||| ||||||||    
T  15275474 tcagtcgatacccaaacactataaagggtccgactaccaattatgagaaccatacacaaa 15275533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 2427837 - 2427733
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||||||||||||||||  ||| ||||  |||||||| ||||||| |||  |  |||||||  | || ||| |||||||||||||||| |||| |||     
T  2427837 tcagtcaatacccaaacaaagtaacgggtctgaccaccacctttgagtacctaaagcaaaagtaatgttattggctttaagccaccacaatgaattaaac 2427738  T
Q  446 ttaac 450  Q
    |||||    
T  2427737 ttaac 2427733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 15792748 - 15792808
Alignment:
Q  348 agtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagt 408  Q
    |||||| ||||||||||  ||| |||| | ||||||| || ||||||||||||||||||||    
T  15792748 agtcaagacccaaacaaactaaggggtccaaccaccatctctgagaaccgtacacaaaagt 15792808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 19874830 - 19874894
Alignment:
Q  341 aaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 405  Q
    ||||||||||| || |||||||| | |||||||| ||| |||||| | |||||||| ||||||||    
T  19874830 aaaaatcagtcgattcccaaacactgtaaagggtccgaacaccaattatgagaaccatacacaaa 19874894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 232 - 512
Target Start/End: Original strand, 5558 - 5837
Alignment:
Q  232 agaaatgaaaatgaaatattataacttcg-cgatgaaaacgctttagtacaaggtgtactaaaatgttccaccctagtaaaaacaactgtcacaaagtat 330  Q
    |||||| ||||||||||||  ||||| || ||||| |||| | | |||||||||||||||||| ||||||| ||  | ||| | ||||||||||||||||    
T  5558 agaaatcaaaatgaaatatattaactacggcgatgtaaacacctcagtacaaggtgtactaaa-tgttccaacccggcaaaca-aactgtcacaaagtat 5655  T
Q  331 aattataaggaaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccac 430  Q
    ||||| ||| | || |||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| || ||| |||||||    
T  5656 aattacaagaataagtcagtcgataccgaaacaatatatagggttcgatcaccaactttgagaaccgtacacaaaaatggttttgatggcttcaagccac 5755  T
Q  431 cacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    | || || ||||||||| ||||||||||| | |||||||||||||||||| |||||||| || | |||| |||||| |||||    
T  5756 cgcaccggatgaaattttactttatctaatagctgctcaataggtgttgcagtgtttttgaacagtctgttgtttcattcat 5837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 361 - 512
Target Start/End: Complemental strand, 12248086 - 12247935
Alignment:
Q  361 acaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaatttaactttatctaac 460  Q
    |||| |||||||| | |||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||     
T  12248086 acaaaataaagggctggaccaccaactttgggaaccgaacacaaaagtggttttattggctttaagccaccacaacgaatgaaatttaactttatctaag 12247987  T
Q  461 aactgctcaataggtgttgctgtgttttttaataatctgctgtttcgttcat 512  Q
    | |||||||||||||||| | ||||| || || | |||| ||||||||||||    
T  12247986 agctgctcaataggtgtttcagtgttattgaacagtctgttgtttcgttcat 12247935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 15438752 - 15438865
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| ||||||||||||   | ||||| ||||||||| || | || | ||||||||||| |||| || ||  | ||||||||||| | ||||||||||    
T  15438752 tcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcgaatgaaat 15438851  T
Q  446 ttaactttatctaa 459  Q
    |||||||| |||||    
T  15438852 ttaactttctctaa 15438865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 15530056 - 15530169
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| ||||||||||||   | ||||| ||||||||| || | || | ||||||||||| |||| || ||  | ||||||||||| | ||||||||||    
T  15530056 tcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcgaatgaaat 15530155  T
Q  446 ttaactttatctaa 459  Q
    |||||||| |||||    
T  15530156 ttaactttctctaa 15530169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 9510379 - 9510486
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| |||||||||||  ||||||||| ||||||||| || |||| ||| | |||||||||||  || ||  ||||||||||||| || || |||||     
T  9510379 tcagtcgatacccaaacataataaagggtccgaccaccatctgtgagtaccctgcacaaaagtggccttattagctttaagccaccaaaaagagtgaaac 9510478  T
Q  446 ttaacttt 453  Q
    || |||||    
T  9510479 tttacttt 9510486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 6244732 - 6244794
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagt 408  Q
    |||||| |||||||||||  |||||||||  |||||||| || |||| |||||||||||||||    
T  6244732 tcagtcgatacccaaacataataaagggtctgaccaccatctgtgagtaccgtacacaaaagt 6244794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 448
Target Start/End: Original strand, 9492264 - 9492363
Alignment:
Q  348 agtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaattt 447  Q
    |||||| || |||||||  |||||||| ||||||||| || ||||||| ||||||||| |||   |||||  | ||||||||||| || |||||||||||    
T  9492264 agtcaagactcaaacaaactaaagggtccgaccaccatctctgagaac-gtacacaaatgtgacattgttagccttaagccaccataaagaatgaaattt 9492362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 478
Target Start/End: Original strand, 14497723 - 14497853
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||||||||||| |||| ||||||  |   ||||||| || |||||||||||||||||||||||||| |||  ||| | |||||||||||||||| ||    
T  14497723 tcagtcaatacccagacaaaataaagaatctaaccaccatctctgagaaccgtacacaaaagtggttttattggtttttaaccaccacaacgaatgatat 14497822  T
Q  446 ttaactttatctaacaactgctcaataggtgtt 478  Q
     ||||||| ||||| |  |||||||||||||||    
T  14497823 gtaactttttctaaga--tgctcaataggtgtt 14497853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 31706354 - 31706467
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| |||| |||||||  |||| ||| ||||||||| || ||||| ||| ||||||| ||||  || ||  |||| |||||||| |||||||| |||    
T  31706354 tcagtcgatactcaaacaaattaaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattagcttttagccaccataacgaatggaat 31706453  T
Q  446 ttaactttatctaa 459  Q
    ||||||||||||||    
T  31706454 ttaactttatctaa 31706467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 33095576 - 33095618
Alignment:
Q  368 aaagggttcgaccaccaactttgagaaccgtacacaaaagtgg 410  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  33095576 aaagggtccgaccaccatctttgagaaccgtacacaaaagtgg 33095618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 29977577 - 29977513
Alignment:
Q  341 aaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 405  Q
    ||||||||||| || |||||||| ||||||| || |||||||||| | |||||||| ||||||||    
T  29977577 aaaaatcagtcgattcccaaacactataaagagtccgaccaccaattgtgagaaccatacacaaa 29977513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 450
Target Start/End: Original strand, 6936975 - 6937079
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||| ||||||||||||   | |||||  |||| ||| || |||||||||||||||||| |||  || ||  || | |||||||| ||||||||||||    
T  6936975 tcagtcgatacccaaacaaatcatagggtctgaccgccatctctgagaaccgtacacaaaaatggcgttattagctctcagccaccaaaacgaatgaaat 6937074  T
Q  446 ttaac 450  Q
    |||||    
T  6937075 ttaac 6937079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 19349523 - 19349587
Alignment:
Q  341 aaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaa 405  Q
    ||||||||||| || || ||||| | |||||||| |||||||||| | |||||||| ||||||||    
T  19349523 aaaaatcagtcgattcctaaacactgtaaagggtccgaccaccaattatgagaaccatacacaaa 19349587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 465
Target Start/End: Original strand, 21685 - 21804
Alignment:
Q  346 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaat 445  Q
    |||||||| |||||||||  |||| |||| ||||||||| || |||||||||| |||||| ||||  || ||  ||||||||||||| |  |||||||||    
T  21685 tcagtcaagacccaaacacaataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaat 21784  T
Q  446 ttaactttatctaacaactg 465  Q
    ||||||| |||||| |||||    
T  21785 ttaacttgatctaataactg 21804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 459
Target Start/End: Complemental strand, 17736 - 17618
Alignment:
Q  341 aaaaatcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaat 440  Q
    |||| |||||| |||||||||||||  ||||||| |||||||||||| |||| ||||||||||||| |    || ||  | ||||||||||| |||||||    
T  17736 aaaagtcagtcgatacccaaacaatgcaaagggtccgaccaccaactctgagtaccgtacacaaaaataacgttcttagccttaagccaccataacgaat 17637  T
Q  441 gaaatttaactttatctaa 459  Q
     |||||||||||| |||||    
T  17636 aaaatttaactttctctaa 17618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 459
Target Start/End: Complemental strand, 51012 - 50898
Alignment:
Q  345 atcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaa 444  Q
    ||||||||| |||||| |||| |||||| | ||||||||| || |||||||| |||||||| ||||  |||||  | ||||||||||| || ||||||||    
T  51012 atcagtcaagacccaagcaatgtaaaggatccgaccaccatctctgagaaccttacacaaatgtggccttgtttgccttaagccaccataaagaatgaaa 50913  T
Q  445 tttaactttatctaa 459  Q
    |||| | ||||||||    
T  50912 tttagcattatctaa 50898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 345 - 459
Target Start/End: Complemental strand, 64307 - 64193
Alignment:
Q  345 atcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttgcctttaagccaccacaacgaatgaaa 444  Q
    ||||||||| ||||||||||  |||||| | |||||| || || ||||||||||||||||| ||||  || ||  | ||||||||||| || ||||||||    
T  64307 atcagtcaagacccaaacaaagtaaaggatccgaccatcatctctgagaaccgtacacaaatgtggcattatttgccttaagccaccataaagaatgaaa 64208  T
Q  445 tttaactttatctaa 459  Q
    |||| | ||||||||    
T  64207 tttagcattatctaa 64193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 7258 - 7315
Alignment:
Q  353 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgg 410  Q
    ||||||||||||   | ||||||||||||||| |||||| ||||||||||||| ||||    
T  7258 atacccaaacaaagcatagggttcgaccaccacctttgataaccgtacacaaatgtgg 7315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University