View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14628_low_6 (Length: 370)
Name: NF14628_low_6
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14628_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 19225522 - 19225856
Alignment:
| Q |
18 |
tctttacacaatttgagatcatagcaacatgcccatttaacacctccaagtgtctatcgacccatcctaaatcatgcaaatctacgggtatgagagtggt |
117 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19225522 |
tctttacacaatttgagatcatagcgacatgcccatttaacacctccaagtgtctattgacccatcctaaatcatgcaaatctacaggtatgagagtggt |
19225621 |
T |
|
| Q |
118 |
aacaggaatttcattgctcaagttaaatgataccacatatgattcgctgtttgtttccccccaccaatggcacactccattcaagtgaacccaaacacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
19225622 |
aacaggaatttcattgctcaagttaaatgataccacatatgattcgctatttgtttccccctaccaatggcacactccattcaagtaaacccaaacacct |
19225721 |
T |
|
| Q |
218 |
accgacctccaataacaattttgcatatcaacataaagttttttccaagagttactttttagactatatacgtcccaatatggcacaaaaggttccactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19225722 |
accgacctccaataacaattttgcatatcaacataaagttttttccaagagttactttttagactatatatgtcccaatatggcacaaaaggttccactt |
19225821 |
T |
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| Q |
318 |
gcaaataatctcccatatactcaacacgctgaatg |
352 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
19225822 |
gcaaataatctcccatatactcaacacgctgaatg |
19225856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 30 - 297
Target Start/End: Complemental strand, 19221489 - 19221224
Alignment:
| Q |
30 |
ttgagatcatagcaacatgcccatttaacacctccaagtgtctatcgacccatcctaaatcatgcaaatctacgggtatgagagtggtaacaggaatttc |
129 |
Q |
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|||| ||||||| |||||| |||||||||| |||||| ||||||| | ||||| ||||| ||||||||||| ||||| || |||||||| || ||| |
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| T |
19221489 |
ttgatatcatagtaacatgtccatttaacagatccaagcgtctatctatccatcttaaattatgcaaatctaagggtaagaaagtggtaatagcc--ttc |
19221392 |
T |
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| Q |
130 |
attgctcaagttaaatgataccacatatgattcgctgtttgtttccccccaccaatggcacactccattcaagtgaacccaaacacctaccgacctccaa |
229 |
Q |
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| ||||||||||||||||||||||||||||||| || |||||| ||||||||| ||||||||| |||||||||| |||| ||||||||| ||||||| | |
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| T |
19221391 |
agtgctcaagttaaatgataccacatatgattcactatttgttcccccccaccgatggcacaccccattcaagtaaaccaaaacacctagagacctccga |
19221292 |
T |
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| Q |
230 |
taacaattttgcatatcaacataaagttttttccaagagttactttttagactatatacgtcccaata |
297 |
Q |
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||||| || |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
19221291 |
taacaccttcgcatatcaacatgaagttttttccaagagttacgccttagactatatatgtcccaata |
19221224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 19219267 - 19219351
Alignment:
| Q |
20 |
tttacacaatttgagatcatagcaacatgccc--atttaacacctccaagtgtctatcgacccatcctaaatcatgcaaatctac |
102 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19219267 |
tttacacaatttgagatcatagcaacatgcccccatttaacacctccaagtgtctatcgacccatcctaaatcatgcaaatctac |
19219351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 110 - 297
Target Start/End: Original strand, 27595564 - 27595751
Alignment:
| Q |
110 |
agagtggtaacaggaatttcattgctcaagttaaatgataccacatatgattcgctgtttgtttccccccaccaatggcacactccattcaagtgaaccc |
209 |
Q |
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|||||||||||||| | |||| ||||||||||||||||||||||||||| ||| | | | || | |||||||||||||||||||| ||||||||||| |
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| T |
27595564 |
agagtggtaacaggtacttcagtgctcaagttaaatgataccacatatgtttcacaatcttctttgctccaccaatggcacactccatccaagtgaaccc |
27595663 |
T |
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| Q |
210 |
aaacacctaccgacctccaataacaattttgcatatcaacataaagttttttccaagagttactttttagactatatacgtcccaata |
297 |
Q |
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| |||||||||| |||||| ||| || | ||||||||||||||||| | | |||| ||||||| | || |||||||| |||||||| |
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| T |
27595664 |
cagcacctaccgaactccaaaaacgatgtcgcatatcaacataaagtgtctcccaaaagttactctctaaactatatatttcccaata |
27595751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 44 - 251
Target Start/End: Original strand, 27589447 - 27589654
Alignment:
| Q |
44 |
acatgcccatttaacacctccaagtgtctatcgacccatcctaaatcatgcaaatctacgggtatgagagtggtaacaggaatttcattgctcaagttaa |
143 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |||||| ||||| | ||| ||| ||| ||||||| |||||||| | |||| |||||||||||| |
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| T |
27589447 |
acatgcccatttaacaccgccaagtctctatcaacccattttaaattaaacaattctgagggaatgagagcggtaacagacacttcagtgctcaagttaa |
27589546 |
T |
|
| Q |
144 |
atgataccacatatgattcgctgtttgtttccccccaccaatggcacactccattcaagtgaacccaaacacctaccgacctccaataacaattttgcat |
243 |
Q |
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||||||||||||||| ||| | |||| ||| |||||||||||||||||| ||||||||| | |||||||||| |||||| |||| ||| |||| |
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| T |
27589547 |
atgataccacatatgtttcagaatctgttattcccaaccaatggcacactccatccaagtgaactccaacacctaccttactccaacaacagtttggcat |
27589646 |
T |
|
| Q |
244 |
atcaacat |
251 |
Q |
| |
|
|||||||| |
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|
| T |
27589647 |
atcaacat |
27589654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 27717078 - 27717263
Alignment:
| Q |
18 |
tctttacacaatttgagatcatagcaacatgcccatttaacacctccaagtgtctatcgacccatcctaaatcatgcaaatctacgggtatgagagtggt |
117 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||||| || |||||| ||||| ||||| ||||||||||||||| ||||| ||||||||| |
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| T |
27717078 |
tctttgcataatttgagatcatagcaacatgctcatttaagactgccaagtatctataaacccactttaaatcatgcaaatcagagggtaagagagtggt |
27717177 |
T |
|
| Q |
118 |
aacaggaatttcattgctcaagttaaatgataccacatatgattcgctgtttgtttccccccaccaatggcacactccattcaagt |
203 |
Q |
| |
|
||| || | ||||||||||| ||||| || |||||||||| ||| | | ||||||||||||||||| || ||||||||||||| |
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| T |
27717178 |
aactggtacctcattgctcaaattaaacgacaccacatatgtttcacattccgtttccccccaccaatgacaaactccattcaagt |
27717263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 27724627 - 27724684
Alignment:
| Q |
240 |
gcatatcaacataaagttttttccaagagttactttttagactatatacgtcccaata |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
27724627 |
gcatatcaacataaagttttttccaagagttacttcttagactatatatatcccaata |
27724684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 27735875 - 27735932
Alignment:
| Q |
240 |
gcatatcaacataaagttttttccaagagttactttttagactatatacgtcccaata |
297 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| | ||||||||||| |||||||| |
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|
| T |
27735875 |
gcatatcaacataaagtttcttccaacggttactctgtagactatatatttcccaata |
27735932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 42449567 - 42449501
Alignment:
| Q |
228 |
aataacaattttgcatatcaacataaagttttttccaagagttactttttagactatatacgtccca |
294 |
Q |
| |
|
|||||||||| ||||||||| || |||||| |||||||||||| |||| ||||||||||| ||||| |
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|
| T |
42449567 |
aataacaattacgcatatcaaaatcaagtttcttccaagagttatttttgagactatatacttccca |
42449501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 14682285 - 14682341
Alignment:
| Q |
240 |
gcatatcaacataaagttttttccaagagttactttttagactatatacgtcccaat |
296 |
Q |
| |
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|||||||||| |||||||| |||||| ||||||| ||||||||||| |||||||| |
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|
| T |
14682285 |
gcatatcaacgtaaagtttcttccaatggttacttcgtagactatatatgtcccaat |
14682341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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